RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 KLHL31Q9H511 634 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 LANCL2Q9NS86 450 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 NINJ2Q9NZG7 142 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 ASB1Q9Y576 335 aa13.62□□□□□ -0.23
HMGN3-201ENST00000275036 SPTBN1Q01082 2364 aaKnown RBP13.62□□□□□ -0.23
HMGN3-201ENST00000275036 IGHV3-20A0A0C4DH32 117 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 C8orf89P0DMQ9 161 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 SMIM10L1P0DMW3 83 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 C1GALT1C1LP0DN25 315 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 ALOX12P18054 663 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 ECHS1P30084 290 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 HNF4AP41235 474 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 HSPA7P48741 367 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 CDC16Q13042 620 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 NAB1Q13506 487 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 BMPR2Q13873 1038 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 HERC3Q15034 1050 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 RBBP5Q15291 538 aaKnown RBP13.61□□□□□ -0.23
HMGN3-201ENST00000275036 LINC00696Q6ZRV3 163 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 ISCA2Q86U28 154 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 KBTBD2Q8IY47 623 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.61□□□□□ -0.23
HMGN3-201ENST00000275036 PDPRQ8NCN5 879 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 CATSPER1Q8NEC5 780 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 BRIX1Q8TDN6 353 aaKnown RBP13.61□□□□□ -0.23
HMGN3-201ENST00000275036 UTP15Q8TED0 518 aaKnown RBP13.61□□□□□ -0.23
HMGN3-201ENST00000275036 TM9SF4Q92544 642 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 KIAA1191Q96A73 305 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 MRRFQ96E11 262 aaKnown RBP13.61□□□□□ -0.23
HMGN3-201ENST00000275036 PEX11GQ96HA9 241 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 SMIM10Q96HG1 83 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 IMMP1LQ96LU5 166 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 IGSF5Q9NSI5 407 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 WWOXQ9NZC7 414 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 PTBP2Q9UKA9 531 aaKnown RBP13.61□□□□□ -0.23
HMGN3-201ENST00000275036 POLEQ07864 2286 aa13.61□□□□□ -0.23
HMGN3-201ENST00000275036 ICE1Q9Y2F5 2266 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 CDC123O75794 336 aaPredicted RBP13.6□□□□□ -0.23
HMGN3-201ENST00000275036 CBX6O95503 412 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 TBX6O95947 436 aaPredicted RBP13.6□□□□□ -0.23
HMGN3-201ENST00000275036 SERPINA7P05543 415 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 ITGAMP11215 1152 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 GNAZP19086 355 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 EPORP19235 508 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 TFEBP19484 476 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 GLRBP48167 497 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 RAB8AP61006 207 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 IRF9Q00978 393 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 RHAGQ02094 409 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 RGS1Q08116 209 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 MFAP5Q13361 173 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 SLBPQ14493 270 aaKnown RBP eCLIP13.6□□□□□ -0.23
HMGN3-201ENST00000275036 CDKL4Q5MAI5 379 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 MFSD4BQ5TF39 518 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 IRAK1BP1Q5VVH5 260 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 HIST2H2BCQ6DN03 193 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 SULT1C3Q6IMI6 304 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 ADNP2Q6IQ32 1131 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 RAPH1Q70E73 1250 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 NAV2Q8IVL1 2488 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 CENPLQ8N0S6 344 aaPredicted RBP13.6□□□□□ -0.23
HMGN3-201ENST00000275036 TBC1D19Q8N5T2 526 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 SIRT6Q8N6T7 355 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 EXT2Q93063 718 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 ATOH8Q96SQ7 321 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 ALG9Q9H6U8 611 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 RIC8BQ9NVN3 520 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 CD274Q9NZQ7 290 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 PTGFRNQ9P2B2 879 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 RNF112Q9ULX5 631 aa13.6□□□□□ -0.23
HMGN3-201ENST00000275036 PCDH17O14917 1159 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 CHST10O43529 356 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 STK16O75716 305 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 SEC24DO94855 1032 aaPredicted RBP13.59□□□□□ -0.23
HMGN3-201ENST00000275036 AGFG2O95081 481 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 SERPINA6P08185 405 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 CYC1P08574 325 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 CD22P20273 847 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 CRABP2P29373 138 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 ZNF169Q14929 603 aaPredicted RBP13.59□□□□□ -0.23
HMGN3-201ENST00000275036 TOR1AIP1Q5JTV8 583 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 FHL5Q5TD97 284 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 MROH9Q5TGP6 573 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 B3GNTL1Q67FW5 361 aaPredicted RBP13.59□□□□□ -0.23
HMGN3-201ENST00000275036 ISLR2Q6UXK2 745 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 TMIGD1Q6UXZ0 262 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 ABHD13Q7L211 337 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 VN1R5Q7Z5H4 357 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 CPEB2Q7Z5Q1 589 aaKnown RBP13.59□□□□□ -0.23
HMGN3-201ENST00000275036 ANKRD37Q7Z713 158 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 RELL1Q8IUW5 271 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 TCAIMQ8N3R3 496 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 TRPV3Q8NET8 790 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 DNAJB14Q8TBM8 379 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 KCTD4Q8WVF5 259 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 METTL21AQ8WXB1 218 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 TSLPQ969D9 159 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 NXNL1Q96CM4 212 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 CNDP1Q96KN2 507 aa13.59□□□□□ -0.23
HMGN3-201ENST00000275036 OR1F2PQ96R84 312 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms