RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 TBC1D32Q96NH3 1257 aa21.58■■□□□ 1.04
PCDHGC3-205ENST00000617641 ATP8B2P98198 1209 aa21.57■■□□□ 1.04
PCDHGC3-205ENST00000617641 IL2RBP14784 551 aa21.57■■□□□ 1.04
PCDHGC3-205ENST00000617641 MFAP1P55081 439 aaKnown RBP21.57■■□□□ 1.04
PCDHGC3-205ENST00000617641 TTC5Q8N0Z6 440 aa21.57■■□□□ 1.04
PCDHGC3-205ENST00000617641 OTUD7AQ8TE49 926 aaPredicted RBP21.57■■□□□ 1.04
PCDHGC3-205ENST00000617641 DDX21Q9NR30 783 aaKnown RBP eCLIP21.57■■□□□ 1.04
PCDHGC3-205ENST00000617641 HYPKQ9NX55 129 aa21.57■■□□□ 1.04
PCDHGC3-205ENST00000617641 PDIA6Q15084 440 aa21.56■■□□□ 1.04
PCDHGC3-205ENST00000617641 MAP3K2Q9Y2U5 619 aa21.56■■□□□ 1.04
PCDHGC3-205ENST00000617641 EXOC6BQ9Y2D4 811 aa21.55■■□□□ 1.04
PCDHGC3-205ENST00000617641 KSR2Q6VAB6 950 aa21.55■■□□□ 1.04
PCDHGC3-205ENST00000617641 NBPF7P0C2Y1 421 aaPredicted RBP21.54■■□□□ 1.04
PCDHGC3-205ENST00000617641 GSPT1P15170 499 aaKnown RBP21.54■■□□□ 1.04
PCDHGC3-205ENST00000617641 AIMP1Q12904 312 aaKnown RBP21.54■■□□□ 1.04
PCDHGC3-205ENST00000617641 SHANK3Q9BYB0 1731 aa21.53■■□□□ 1.04
PCDHGC3-205ENST00000617641 LTBP4Q8N2S1 1624 aa21.53■■□□□ 1.04
PCDHGC3-205ENST00000617641 BTG4Q9NY30 223 aa21.53■■□□□ 1.04
PCDHGC3-205ENST00000617641 USP35Q9P2H5 1018 aa21.53■■□□□ 1.04
PCDHGC3-205ENST00000617641 DDX54Q8TDD1 881 aaKnown RBP21.52■■□□□ 1.04
PCDHGC3-205ENST00000617641 FMNL2Q96PY5 1086 aa21.52■■□□□ 1.04
PCDHGC3-205ENST00000617641 DAXXQ9UER7 740 aaPredicted RBP21.52■■□□□ 1.04
PCDHGC3-205ENST00000617641 AHDC1Q5TGY3 1603 aaPredicted RBP21.52■■□□□ 1.04
PCDHGC3-205ENST00000617641 SNRPA1P09661 255 aaKnown RBP21.52■■□□□ 1.04
PCDHGC3-205ENST00000617641 MYL6BP14649 208 aa21.52■■□□□ 1.04
PCDHGC3-205ENST00000617641 USP16Q9Y5T5 823 aa21.52■■□□□ 1.04
PCDHGC3-205ENST00000617641 TTC22Q5TAA0 569 aa21.51■■□□□ 1.03
PCDHGC3-205ENST00000617641 C22orf23Q9BZE7 217 aa21.5■■□□□ 1.03
PCDHGC3-205ENST00000617641 GLI3P10071 1580 aa21.5■■□□□ 1.03
PCDHGC3-205ENST00000617641 DDX58O95786 925 aaKnown RBP21.5■■□□□ 1.03
PCDHGC3-205ENST00000617641 NKX1-1Q15270 411 aaPredicted RBP21.5■■□□□ 1.03
PCDHGC3-205ENST00000617641 CWF19L2Q2TBE0 894 aaKnown RBP21.5■■□□□ 1.03
PCDHGC3-205ENST00000617641 ALDH1L1O75891 902 aa21.49■■□□□ 1.03
PCDHGC3-205ENST00000617641 TBC1D9Q6ZT07 1266 aa21.49■■□□□ 1.03
PCDHGC3-205ENST00000617641 PPP1R42Q7Z4L9 355 aa21.49■■□□□ 1.03
PCDHGC3-205ENST00000617641 SSH3Q8TE77 659 aa21.49■■□□□ 1.03
PCDHGC3-205ENST00000617641 IBTKQ9P2D0 1353 aaPredicted RBP21.49■■□□□ 1.03
PCDHGC3-205ENST00000617641 ERVV-2B6SEH9 535 aa21.49■■□□□ 1.03
PCDHGC3-205ENST00000617641 PIP4K2AP48426 406 aaPredicted RBP21.49■■□□□ 1.03
PCDHGC3-205ENST00000617641 XAGE3Q8WTP9 111 aa21.48■■□□□ 1.03
PCDHGC3-205ENST00000617641 LRRCC1Q9C099 1032 aa21.48■■□□□ 1.03
PCDHGC3-205ENST00000617641 COL14A1Q05707 1796 aaKnown RBP21.48■■□□□ 1.03
PCDHGC3-205ENST00000617641 COL22A1Q8NFW1 1626 aaPredicted RBP21.47■■□□□ 1.03
PCDHGC3-205ENST00000617641 POLA2Q14181 598 aa21.47■■□□□ 1.03
PCDHGC3-205ENST00000617641 CDC45O75419 566 aa21.46■■□□□ 1.03
PCDHGC3-205ENST00000617641 COPS6Q7L5N1 327 aa21.46■■□□□ 1.03
PCDHGC3-205ENST00000617641 RIC3Q7Z5B4 369 aa21.46■■□□□ 1.03
PCDHGC3-205ENST00000617641 C9orf78Q9NZ63 289 aaPredicted RBP21.46■■□□□ 1.03
PCDHGC3-205ENST00000617641 COL16A1Q07092 1604 aaPredicted RBP21.46■■□□□ 1.03
PCDHGC3-205ENST00000617641 SRGAP3O43295 1099 aa21.46■■□□□ 1.03
PCDHGC3-205ENST00000617641 LRP10Q7Z4F1 713 aa21.46■■□□□ 1.03
PCDHGC3-205ENST00000617641 LINS1Q8NG48 757 aa21.46■■□□□ 1.03
PCDHGC3-205ENST00000617641 LAMB4A4D0S4 1761 aa21.45■■□□□ 1.02
PCDHGC3-205ENST00000617641 UBR2Q8IWV8 1755 aa21.44■■□□□ 1.02
PCDHGC3-205ENST00000617641 PDE1AP54750 535 aa21.44■■□□□ 1.02
PCDHGC3-205ENST00000617641 TOGARAM1Q9Y4F4 1720 aa21.43■■□□□ 1.02
PCDHGC3-205ENST00000617641 PAPPAQ13219 1627 aa21.43■■□□□ 1.02
PCDHGC3-205ENST00000617641 IGKV5-2P06315 115 aa21.43■■□□□ 1.02
PCDHGC3-205ENST00000617641 SDSP20132 328 aa21.43■■□□□ 1.02
PCDHGC3-205ENST00000617641 SURF6O75683 361 aaKnown RBP21.43■■□□□ 1.02
PCDHGC3-205ENST00000617641 KCPQ6ZWJ8 1503 aa21.43■■□□□ 1.02
PCDHGC3-205ENST00000617641 SALL3Q9BXA9 1300 aa21.42■■□□□ 1.02
PCDHGC3-205ENST00000617641 NBR1Q14596 966 aa21.42■■□□□ 1.02
PCDHGC3-205ENST00000617641 OSBPL3Q9H4L5 887 aa21.42■■□□□ 1.02
PCDHGC3-205ENST00000617641 GRM8O00222 908 aa21.41■■□□□ 1.02
PCDHGC3-205ENST00000617641 BECN1Q14457 450 aa21.41■■□□□ 1.02
PCDHGC3-205ENST00000617641 TSHZ3Q63HK5 1081 aa21.41■■□□□ 1.02
PCDHGC3-205ENST00000617641 PTCD1O75127 700 aaKnown RBP21.41■■□□□ 1.02
PCDHGC3-205ENST00000617641 ANKRD13DQ6ZTN6 518 aa21.41■■□□□ 1.02
PCDHGC3-205ENST00000617641 PHLPP1O60346 1717 aa21.41■■□□□ 1.02
PCDHGC3-205ENST00000617641 MYD88Q99836 296 aa21.4■■□□□ 1.02
PCDHGC3-205ENST00000617641 METTL22Q9BUU2 404 aaPredicted RBP21.4■■□□□ 1.02
PCDHGC3-205ENST00000617641 IL1RAPL2Q9NP60 686 aa21.4■■□□□ 1.02
PCDHGC3-205ENST00000617641 RBM25P49756 843 aaKnown RBP21.4■■□□□ 1.02
PCDHGC3-205ENST00000617641 NEXNQ0ZGT2 675 aa21.4■■□□□ 1.02
PCDHGC3-205ENST00000617641 MTX1Q13505 466 aa21.4■■□□□ 1.02
PCDHGC3-205ENST00000617641 DISP2A7MBM2 1401 aa21.4■■□□□ 1.02
PCDHGC3-205ENST00000617641 UTYO14607 1347 aa21.39■■□□□ 1.02
PCDHGC3-205ENST00000617641 NEURL1BA8MQ27 555 aa21.39■■□□□ 1.02
PCDHGC3-205ENST00000617641 RAB11FIP3O75154 756 aa21.39■■□□□ 1.02
PCDHGC3-205ENST00000617641 MX1P20591 662 aa21.39■■□□□ 1.02
PCDHGC3-205ENST00000617641 SUCLG2Q96I99 432 aa21.39■■□□□ 1.02
PCDHGC3-205ENST00000617641 TNS2Q63HR2 1409 aa21.39■■□□□ 1.01
PCDHGC3-205ENST00000617641 NBPF26B4DH59 902 aa21.38■■□□□ 1.01
PCDHGC3-205ENST00000617641 NBPF14Q5TI25 921 aa21.38■■□□□ 1.01
PCDHGC3-205ENST00000617641 NBPF10Q6P3W6 841 aaKnown RBP21.38■■□□□ 1.01
PCDHGC3-205ENST00000617641 NBPF15Q8N660 670 aa21.38■■□□□ 1.01
PCDHGC3-205ENST00000617641 TMOD3Q9NYL9 352 aa21.38■■□□□ 1.01
PCDHGC3-205ENST00000617641 KAZALD1Q96I82 304 aa21.38■■□□□ 1.01
PCDHGC3-205ENST00000617641 TBC1D2Q9BYX2 928 aa21.38■■□□□ 1.01
PCDHGC3-205ENST00000617641 HDAC5Q9UQL6 1122 aa21.38■■□□□ 1.01
PCDHGC3-205ENST00000617641 ADAMTS2O95450 1211 aa21.37■■□□□ 1.01
PCDHGC3-205ENST00000617641 RHPN1Q8TCX5 695 aa21.37■■□□□ 1.01
PCDHGC3-205ENST00000617641 ARFGEF2Q9Y6D5 1785 aa21.37■■□□□ 1.01
PCDHGC3-205ENST00000617641 GCKRQ14397 625 aa21.37■■□□□ 1.01
PCDHGC3-205ENST00000617641 BICC1Q9H694 974 aaKnown RBP21.36■■□□□ 1.01
PCDHGC3-205ENST00000617641 ERBB4Q15303 1308 aa21.36■■□□□ 1.01
PCDHGC3-205ENST00000617641 A1BGP04217 495 aa21.35■■□□□ 1.01
PCDHGC3-205ENST00000617641 KIF1BPQ96EK5 621 aa21.35■■□□□ 1.01
PCDHGC3-205ENST00000617641 STAP2Q9UGK3 403 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms