RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 POTECB2RU33 542 aa15.29■□□□□ 0.04
VPS53-207ENST00000570510 TNNT2P45379 298 aaPredicted RBP15.29■□□□□ 0.04
VPS53-207ENST00000570510 LBX1P52954 281 aa15.29■□□□□ 0.04
VPS53-207ENST00000570510 NFATC2IPQ8NCF5 419 aa15.29■□□□□ 0.04
VPS53-207ENST00000570510 ZNF622Q969S3 477 aaKnown RBP eCLIP15.29■□□□□ 0.04
VPS53-207ENST00000570510 CNTNAP1P78357 1384 aa15.28■□□□□ 0.04
VPS53-207ENST00000570510 SERPINB2P05120 415 aa15.28■□□□□ 0.04
VPS53-207ENST00000570510 EIF4A2Q14240 407 aaKnown RBP15.28■□□□□ 0.04
VPS53-207ENST00000570510 NFIXQ14938 502 aa15.28■□□□□ 0.04
VPS53-207ENST00000570510 KIF20BQ96Q89 1820 aa15.28■□□□□ 0.04
VPS53-207ENST00000570510 IQCA1LA6NCM1 817 aa15.27■□□□□ 0.04
VPS53-207ENST00000570510 NFKBIEO00221 500 aa15.27■□□□□ 0.04
VPS53-207ENST00000570510 ABHD8Q96I13 439 aa15.27■□□□□ 0.04
VPS53-207ENST00000570510 ZNF831Q5JPB2 1677 aa15.27■□□□□ 0.03
VPS53-207ENST00000570510 COL5A3P25940 1745 aaPredicted RBP15.26■□□□□ 0.03
VPS53-207ENST00000570510 TMEM88BA6NKF7 163 aa15.26■□□□□ 0.03
VPS53-207ENST00000570510 NPHP1O15259 732 aa15.26■□□□□ 0.03
VPS53-207ENST00000570510 C21orf2O43822 256 aa15.26■□□□□ 0.03
VPS53-207ENST00000570510 VEGFBP49765 207 aa15.26■□□□□ 0.03
VPS53-207ENST00000570510 MLLT1Q03111 559 aaPredicted RBP15.26■□□□□ 0.03
VPS53-207ENST00000570510 TRIM26Q12899 539 aaPredicted RBP15.26■□□□□ 0.03
VPS53-207ENST00000570510 INTS5Q6P9B9 1019 aaKnown RBP15.26■□□□□ 0.03
VPS53-207ENST00000570510 CARD14Q9BXL6 1004 aa15.26■□□□□ 0.03
VPS53-207ENST00000570510 POLKQ9UBT6 870 aa15.26■□□□□ 0.03
VPS53-207ENST00000570510 CCDC85CA6NKD9 419 aa15.25■□□□□ 0.03
VPS53-207ENST00000570510 DDNO94850 711 aaPredicted RBP15.25■□□□□ 0.03
VPS53-207ENST00000570510 BICDL1Q6ZP65 573 aa15.25■□□□□ 0.03
VPS53-207ENST00000570510 NARFQ9UHQ1 456 aa15.25■□□□□ 0.03
VPS53-207ENST00000570510 CLEC11AQ9Y240 323 aa15.25■□□□□ 0.03
VPS53-207ENST00000570510 POTEIP0CG38 1075 aa15.24■□□□□ 0.03
VPS53-207ENST00000570510 POTEJP0CG39 1038 aa15.24■□□□□ 0.03
VPS53-207ENST00000570510 PDE6BP35913 854 aa15.24■□□□□ 0.03
VPS53-207ENST00000570510 EAPPQ56P03 285 aaPredicted RBP15.24■□□□□ 0.03
VPS53-207ENST00000570510 LDHDQ86WU2 507 aa15.24■□□□□ 0.03
VPS53-207ENST00000570510 DNAJC10Q8IXB1 793 aa15.24■□□□□ 0.03
VPS53-207ENST00000570510 BEGAINQ9BUH8 593 aa15.24■□□□□ 0.03
VPS53-207ENST00000570510 TAOK3Q9H2K8 898 aa15.24■□□□□ 0.03
VPS53-207ENST00000570510 MYH14Q7Z406 1995 aaKnown RBP15.24■□□□□ 0.03
VPS53-207ENST00000570510 MAP2K1Q02750 393 aaPredicted RBP15.23■□□□□ 0.03
VPS53-207ENST00000570510 WBP1LQ9NX94 342 aa15.23■□□□□ 0.03
VPS53-207ENST00000570510 PDZRN3Q9UPQ7 1066 aa15.23■□□□□ 0.03
VPS53-207ENST00000570510 TIAM2Q8IVF5 1701 aa15.23■□□□□ 0.03
VPS53-207ENST00000570510 SOS1Q07889 1333 aaPredicted RBP15.22■□□□□ 0.03
VPS53-207ENST00000570510 CFAP44Q96MT7 982 aa15.22■□□□□ 0.03
VPS53-207ENST00000570510 COL15A1P39059 1388 aa15.22■□□□□ 0.03
VPS53-207ENST00000570510 DEFB115Q30KQ5 88 aa15.21■□□□□ 0.03
VPS53-207ENST00000570510 SOGA3Q5TF21 947 aa15.2■□□□□ 0.02
VPS53-207ENST00000570510 NPM2Q86SE8 214 aaKnown RBP15.2■□□□□ 0.02
VPS53-207ENST00000570510 POLR3GLQ9BT43 218 aa15.2■□□□□ 0.02
VPS53-207ENST00000570510 ABT1Q9ULW3 272 aaKnown RBP15.2■□□□□ 0.02
VPS53-207ENST00000570510 PASKQ96RG2 1323 aa15.19■□□□□ 0.02
VPS53-207ENST00000570510 CYP19A1P11511 503 aaPredicted RBP15.19■□□□□ 0.02
VPS53-207ENST00000570510 CANXP27824 592 aaKnown RBP15.19■□□□□ 0.02
VPS53-207ENST00000570510 PAXIP1Q6ZW49 1069 aaPredicted RBP15.19■□□□□ 0.02
VPS53-207ENST00000570510 CNKSR1Q969H4 720 aa15.19■□□□□ 0.02
VPS53-207ENST00000570510 BRIP1Q9BX63 1249 aa15.19■□□□□ 0.02
VPS53-207ENST00000570510 CCDC88AQ3V6T2 1871 aa15.18■□□□□ 0.02
VPS53-207ENST00000570510 A0A087WZG4 1122 aa15.18■□□□□ 0.02
VPS53-207ENST00000570510 HSPA8P11142 646 aaKnown RBP15.18■□□□□ 0.02
VPS53-207ENST00000570510 TAF1DQ9H5J8 278 aaPredicted RBP15.18■□□□□ 0.02
VPS53-207ENST00000570510 ZBTB1Q9Y2K1 713 aa15.18■□□□□ 0.02
VPS53-207ENST00000570510 ZNF330Q9Y3S2 320 aaPredicted RBP15.18■□□□□ 0.02
VPS53-207ENST00000570510 LTBP3Q9NS15 1303 aa15.17■□□□□ 0.02
VPS53-207ENST00000570510 HACL1Q9UJ83 578 aa15.17■□□□□ 0.02
VPS53-207ENST00000570510 WDR33Q9C0J8 1336 aaKnown RBP15.17■□□□□ 0.02
VPS53-207ENST00000570510 CARMIL3Q8ND23 1372 aa15.16■□□□□ 0.02
VPS53-207ENST00000570510 GRM1Q13255 1194 aa15.16■□□□□ 0.02
VPS53-207ENST00000570510 SULT6B1Q6IMI4 303 aa15.16■□□□□ 0.02
VPS53-207ENST00000570510 PNMA8AQ86V59 439 aaPredicted RBP15.16■□□□□ 0.02
VPS53-207ENST00000570510 CCDC24Q8N4L8 307 aa15.16■□□□□ 0.02
VPS53-207ENST00000570510 SLC52A2Q9HAB3 445 aa15.16■□□□□ 0.02
VPS53-207ENST00000570510 BCL2L12Q9HB09 334 aa15.16■□□□□ 0.02
VPS53-207ENST00000570510 ANKRD26Q9UPS8 1709 aa15.15■□□□□ 0.02
VPS53-207ENST00000570510 RASSF10A6NK89 507 aa15.15■□□□□ 0.02
VPS53-207ENST00000570510 STARD3NLO95772 234 aa15.15■□□□□ 0.02
VPS53-207ENST00000570510 ITGBL1O95965 494 aaPredicted RBP15.15■□□□□ 0.02
VPS53-207ENST00000570510 ST5P78524 1137 aa15.15■□□□□ 0.02
VPS53-207ENST00000570510 SLC39A6Q13433 755 aa15.15■□□□□ 0.02
VPS53-207ENST00000570510 AEBP1Q8IUX7 1158 aa15.15■□□□□ 0.02
VPS53-207ENST00000570510 CNTROBQ8N137 903 aa15.15■□□□□ 0.02
VPS53-207ENST00000570510 L3MBTL3Q96JM7 780 aaPredicted RBP15.15■□□□□ 0.02
VPS53-207ENST00000570510 EPHX2P34913 555 aa15.14■□□□□ 0.01
VPS53-207ENST00000570510 AKAP4Q5JQC9 854 aa15.14■□□□□ 0.01
VPS53-207ENST00000570510 TBC1D9BQ66K14 1250 aa15.14■□□□□ 0.01
VPS53-207ENST00000570510 PRPF40BQ6NWY9 871 aaKnown RBP15.14■□□□□ 0.01
VPS53-207ENST00000570510 CNBD1Q8NA66 436 aa15.14■□□□□ 0.01
VPS53-207ENST00000570510 SETDB2Q96T68 719 aa15.14■□□□□ 0.01
VPS53-207ENST00000570510 AFDNP55196 1824 aaKnown RBP15.14■□□□□ 0.01
VPS53-207ENST00000570510 ECE1P42892 770 aa15.13■□□□□ 0.01
VPS53-207ENST00000570510 TJP1Q07157 1748 aa15.13■□□□□ 0.01
VPS53-207ENST00000570510 MAP1SQ66K74 1059 aaPredicted RBP15.13■□□□□ 0.01
VPS53-207ENST00000570510 STYK1Q6J9G0 422 aa15.13■□□□□ 0.01
VPS53-207ENST00000570510 PRR5LQ6MZQ0 368 aa15.13■□□□□ 0.01
VPS53-207ENST00000570510 TTC5Q8N0Z6 440 aa15.13■□□□□ 0.01
VPS53-207ENST00000570510 VSIG10Q8N0Z9 540 aa15.13■□□□□ 0.01
VPS53-207ENST00000570510 DLEC1Q9Y238 1755 aa15.13■□□□□ 0.01
VPS53-207ENST00000570510 MASTLQ96GX5 879 aa15.12■□□□□ 0.01
VPS53-207ENST00000570510 RGS19P49795 217 aa15.11■□□□□ 0.01
VPS53-207ENST00000570510 CCDC93Q567U6 631 aa15.11■□□□□ 0.01
VPS53-207ENST00000570510 LGR6Q9HBX8 967 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms