RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 ZNF530Q6P9A1 599 aaPredicted RBP12.84□□□□□ -0.35
COL17A1-207ENST00000488320 NFATC2IPQ8NCF5 419 aa12.84□□□□□ -0.35
COL17A1-207ENST00000488320 ZNF219Q9P2Y4 722 aaPredicted RBP12.84□□□□□ -0.35
COL17A1-207ENST00000488320 KDM6AO15550 1401 aaPredicted RBP12.84□□□□□ -0.35
COL17A1-207ENST00000488320 EIF4A2Q14240 407 aaKnown RBP12.83□□□□□ -0.36
COL17A1-207ENST00000488320 FAM161AQ3B820 660 aa12.83□□□□□ -0.36
COL17A1-207ENST00000488320 ERFEQ4G0M1 354 aa12.83□□□□□ -0.36
COL17A1-207ENST00000488320 TIAM2Q8IVF5 1701 aa12.82□□□□□ -0.36
COL17A1-207ENST00000488320 NFKBIEO00221 500 aa12.82□□□□□ -0.36
COL17A1-207ENST00000488320 SERPINB2P05120 415 aa12.82□□□□□ -0.36
COL17A1-207ENST00000488320 LBX1P52954 281 aa12.82□□□□□ -0.36
COL17A1-207ENST00000488320 C1orf141Q5JVX7 400 aa12.82□□□□□ -0.36
COL17A1-207ENST00000488320 INTS5Q6P9B9 1019 aaKnown RBP12.82□□□□□ -0.36
COL17A1-207ENST00000488320 ZNF622Q969S3 477 aaKnown RBP eCLIP12.82□□□□□ -0.36
COL17A1-207ENST00000488320 CARD14Q9BXL6 1004 aa12.82□□□□□ -0.36
COL17A1-207ENST00000488320 POLKQ9UBT6 870 aa12.82□□□□□ -0.36
COL17A1-207ENST00000488320 CNTNAP1P78357 1384 aa12.81□□□□□ -0.36
COL17A1-207ENST00000488320 AFDNP55196 1824 aaKnown RBP12.81□□□□□ -0.36
COL17A1-207ENST00000488320 TNNT2P45379 298 aaPredicted RBP12.81□□□□□ -0.36
COL17A1-207ENST00000488320 NFIXQ14938 502 aa12.81□□□□□ -0.36
COL17A1-207ENST00000488320 AMOTQ4VCS5 1084 aa12.81□□□□□ -0.36
COL17A1-207ENST00000488320 C21orf2O43822 256 aa12.8□□□□□ -0.36
COL17A1-207ENST00000488320 POTEIP0CG38 1075 aa12.8□□□□□ -0.36
COL17A1-207ENST00000488320 POTEJP0CG39 1038 aa12.8□□□□□ -0.36
COL17A1-207ENST00000488320 VEGFBP49765 207 aa12.8□□□□□ -0.36
COL17A1-207ENST00000488320 ABHD8Q96I13 439 aa12.8□□□□□ -0.36
COL17A1-207ENST00000488320 PCDH10Q9P2E7 1040 aa12.8□□□□□ -0.36
COL17A1-207ENST00000488320 NARFQ9UHQ1 456 aa12.8□□□□□ -0.36
COL17A1-207ENST00000488320 TMEM88BA6NKF7 163 aa12.79□□□□□ -0.36
COL17A1-207ENST00000488320 DDNO94850 711 aaPredicted RBP12.79□□□□□ -0.36
COL17A1-207ENST00000488320 DNAJC10Q8IXB1 793 aa12.79□□□□□ -0.36
COL17A1-207ENST00000488320 MLLT1Q03111 559 aaPredicted RBP12.78□□□□□ -0.36
COL17A1-207ENST00000488320 BICDL1Q6ZP65 573 aa12.78□□□□□ -0.36
COL17A1-207ENST00000488320 WBP1LQ9NX94 342 aa12.78□□□□□ -0.36
COL17A1-207ENST00000488320 CLEC11AQ9Y240 323 aa12.78□□□□□ -0.36
COL17A1-207ENST00000488320 IQCA1LA6NCM1 817 aa12.77□□□□□ -0.37
COL17A1-207ENST00000488320 CCDC85CA6NKD9 419 aa12.77□□□□□ -0.37
COL17A1-207ENST00000488320 LDHDQ86WU2 507 aa12.77□□□□□ -0.37
COL17A1-207ENST00000488320 DICER1Q9UPY3 1922 aaKnown RBP12.77□□□□□ -0.37
COL17A1-207ENST00000488320 SOS1Q07889 1333 aaPredicted RBP12.77□□□□□ -0.37
COL17A1-207ENST00000488320 ANKRD26Q9UPS8 1709 aa12.76□□□□□ -0.37
COL17A1-207ENST00000488320 DLEC1Q9Y238 1755 aa12.76□□□□□ -0.37
COL17A1-207ENST00000488320 PDE6BP35913 854 aa12.76□□□□□ -0.37
COL17A1-207ENST00000488320 DEFB115Q30KQ5 88 aa12.76□□□□□ -0.37
COL17A1-207ENST00000488320 EAPPQ56P03 285 aaPredicted RBP12.76□□□□□ -0.37
COL17A1-207ENST00000488320 PDZRN3Q9UPQ7 1066 aa12.76□□□□□ -0.37
COL17A1-207ENST00000488320 TJP1Q07157 1748 aa12.76□□□□□ -0.37
COL17A1-207ENST00000488320 CYP19A1P11511 503 aaPredicted RBP12.75□□□□□ -0.37
COL17A1-207ENST00000488320 CANXP27824 592 aaKnown RBP12.75□□□□□ -0.37
COL17A1-207ENST00000488320 COL15A1P39059 1388 aa12.75□□□□□ -0.37
COL17A1-207ENST00000488320 MAP2K1Q02750 393 aaPredicted RBP12.75□□□□□ -0.37
COL17A1-207ENST00000488320 PASKQ96RG2 1323 aa12.75□□□□□ -0.37
COL17A1-207ENST00000488320 TAOK3Q9H2K8 898 aa12.75□□□□□ -0.37
COL17A1-207ENST00000488320 NPHP1O15259 732 aa12.74□□□□□ -0.37
COL17A1-207ENST00000488320 HSPA8P11142 646 aaKnown RBP12.74□□□□□ -0.37
COL17A1-207ENST00000488320 CCDC24Q8N4L8 307 aa12.74□□□□□ -0.37
COL17A1-207ENST00000488320 CFAP44Q96MT7 982 aa12.74□□□□□ -0.37
COL17A1-207ENST00000488320 POLR3GLQ9BT43 218 aa12.74□□□□□ -0.37
COL17A1-207ENST00000488320 BCL2L12Q9HB09 334 aa12.74□□□□□ -0.37
COL17A1-207ENST00000488320 ZBTB1Q9Y2K1 713 aa12.74□□□□□ -0.37
COL17A1-207ENST00000488320 NRXN2Q9P2S2 1712 aa12.74□□□□□ -0.37
COL17A1-207ENST00000488320 CARMIL3Q8ND23 1372 aa12.73□□□□□ -0.37
COL17A1-207ENST00000488320 BEGAINQ9BUH8 593 aa12.73□□□□□ -0.37
COL17A1-207ENST00000488320 BRIP1Q9BX63 1249 aa12.73□□□□□ -0.37
COL17A1-207ENST00000488320 TAF1DQ9H5J8 278 aaPredicted RBP12.73□□□□□ -0.37
COL17A1-207ENST00000488320 FER1L6Q2WGJ9 1857 aa12.73□□□□□ -0.37
COL17A1-207ENST00000488320 VIRMAQ69YN4 1812 aaKnown RBP12.73□□□□□ -0.37
COL17A1-207ENST00000488320 ADAMTS7Q9UKP4 1686 aa12.73□□□□□ -0.37
COL17A1-207ENST00000488320 WDR33Q9C0J8 1336 aaKnown RBP12.72□□□□□ -0.37
COL17A1-207ENST00000488320 ITGBL1O95965 494 aaPredicted RBP12.72□□□□□ -0.37
COL17A1-207ENST00000488320 SLC39A6Q13433 755 aa12.72□□□□□ -0.37
COL17A1-207ENST00000488320 SULT6B1Q6IMI4 303 aa12.72□□□□□ -0.37
COL17A1-207ENST00000488320 AEBP1Q8IUX7 1158 aa12.72□□□□□ -0.37
COL17A1-207ENST00000488320 CNKSR1Q969H4 720 aa12.72□□□□□ -0.37
COL17A1-207ENST00000488320 ABT1Q9ULW3 272 aaKnown RBP12.72□□□□□ -0.37
COL17A1-207ENST00000488320 LTBP3Q9NS15 1303 aa12.71□□□□□ -0.37
COL17A1-207ENST00000488320 A0A087WZG4 1122 aa12.71□□□□□ -0.37
COL17A1-207ENST00000488320 SOGA3Q5TF21 947 aa12.71□□□□□ -0.37
COL17A1-207ENST00000488320 TBC1D9BQ66K14 1250 aa12.71□□□□□ -0.37
COL17A1-207ENST00000488320 PAXIP1Q6ZW49 1069 aaPredicted RBP12.71□□□□□ -0.37
COL17A1-207ENST00000488320 SLC52A2Q9HAB3 445 aa12.71□□□□□ -0.37
COL17A1-207ENST00000488320 HACL1Q9UJ83 578 aa12.71□□□□□ -0.37
COL17A1-207ENST00000488320 ZNF330Q9Y3S2 320 aaPredicted RBP12.71□□□□□ -0.37
COL17A1-207ENST00000488320 SCN4AP35499 1836 aa12.71□□□□□ -0.38
COL17A1-207ENST00000488320 RASSF10A6NK89 507 aa12.7□□□□□ -0.38
COL17A1-207ENST00000488320 AKAP4Q5JQC9 854 aa12.7□□□□□ -0.38
COL17A1-207ENST00000488320 CNTROBQ8N137 903 aa12.7□□□□□ -0.38
COL17A1-207ENST00000488320 LGR6Q9HBX8 967 aa12.7□□□□□ -0.38
COL17A1-207ENST00000488320 CACNA1SQ13698 1873 aa12.7□□□□□ -0.38
COL17A1-207ENST00000488320 SCN11AQ9UI33 1791 aa12.69□□□□□ -0.38
COL17A1-207ENST00000488320 STARD3NLO95772 234 aa12.69□□□□□ -0.38
COL17A1-207ENST00000488320 EPHX2P34913 555 aa12.69□□□□□ -0.38
COL17A1-207ENST00000488320 RGS19P49795 217 aa12.69□□□□□ -0.38
COL17A1-207ENST00000488320 GRM1Q13255 1194 aa12.69□□□□□ -0.38
COL17A1-207ENST00000488320 MAP1SQ66K74 1059 aaPredicted RBP12.69□□□□□ -0.38
COL17A1-207ENST00000488320 PRR5LQ6MZQ0 368 aa12.69□□□□□ -0.38
COL17A1-207ENST00000488320 NPM2Q86SE8 214 aaKnown RBP12.69□□□□□ -0.38
COL17A1-207ENST00000488320 PNMA8AQ86V59 439 aaPredicted RBP12.69□□□□□ -0.38
COL17A1-207ENST00000488320 L3MBTL3Q96JM7 780 aaPredicted RBP12.69□□□□□ -0.38
COL17A1-207ENST00000488320 ST5P78524 1137 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms