RNA–Protein interactions for RNA: ENST00000487565.5

GARNL3-218, Transcript of GTPase activating Rap/RanGAP domain like 3, human

TSL 4

Gene GARNL3, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GARNL3-218	ENST00000487565	SPIRE2	Q8WWL2	714 aa		10.52	□□□□□ -0.73
GARNL3-218	ENST00000487565	USB1	Q9BQ65	265 aa	Known RBP	10.52	□□□□□ -0.73
GARNL3-218	ENST00000487565	FCF1	Q9Y324	198 aa	Known RBP	10.52	□□□□□ -0.73
GARNL3-218	ENST00000487565	C1orf167	Q5SNV9	1468 aa		10.52	□□□□□ -0.73
GARNL3-218	ENST00000487565	ANKRD36B	Q8N2N9	1353 aa		10.52	□□□□□ -0.73
GARNL3-218	ENST00000487565	GFRA3	O60609	400 aa		10.51	□□□□□ -0.73
GARNL3-218	ENST00000487565	LIAT1	Q6ZQX7	453 aa		10.51	□□□□□ -0.73
GARNL3-218	ENST00000487565	FDX1	P10109	184 aa		10.5	□□□□□ -0.73
GARNL3-218	ENST00000487565	MS4A1	P11836	297 aa		10.5	□□□□□ -0.73
GARNL3-218	ENST00000487565	DDX10	Q13206	875 aa	Known RBP	10.5	□□□□□ -0.73
GARNL3-218	ENST00000487565	LAPTM4A	Q15012	233 aa		10.5	□□□□□ -0.73
GARNL3-218	ENST00000487565	SPRYD7	Q5W111	196 aa		10.5	□□□□□ -0.73
GARNL3-218	ENST00000487565	TERF2IP	Q9NYB0	399 aa		10.5	□□□□□ -0.73
GARNL3-218	ENST00000487565		A0A1W2PP64	1363 aa		10.5	□□□□□ -0.73
GARNL3-218	ENST00000487565	NSD3	Q9BZ95	1437 aa		10.5	□□□□□ -0.73
GARNL3-218	ENST00000487565	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	10.49	□□□□□ -0.73
GARNL3-218	ENST00000487565	CD163L1	Q9NR16	1453 aa		10.49	□□□□□ -0.73
GARNL3-218	ENST00000487565	MON2	Q7Z3U7	1717 aa		10.48	□□□□□ -0.73
GARNL3-218	ENST00000487565	NDUFV2	P19404	249 aa		10.48	□□□□□ -0.73
GARNL3-218	ENST00000487565	SYMPK	Q92797	1274 aa	Known RBP	10.48	□□□□□ -0.73
GARNL3-218	ENST00000487565	SLC12A5	Q9H2X9	1139 aa		10.48	□□□□□ -0.73
GARNL3-218	ENST00000487565	CABP1	Q9NZU7	370 aa		10.48	□□□□□ -0.73
GARNL3-218	ENST00000487565	PDZRN3	Q9UPQ7	1066 aa		10.48	□□□□□ -0.73
GARNL3-218	ENST00000487565	NRK	Q7Z2Y5	1582 aa		10.48	□□□□□ -0.73
GARNL3-218	ENST00000487565	MOXD2P	A6NHM9	499 aa		10.47	□□□□□ -0.73
GARNL3-218	ENST00000487565	ESCO1	Q5FWF5	840 aa		10.47	□□□□□ -0.73
GARNL3-218	ENST00000487565		Q6ZNB5	142 aa		10.47	□□□□□ -0.73
GARNL3-218	ENST00000487565	ZNF598	Q86UK7	904 aa	Known RBP	10.47	□□□□□ -0.73
GARNL3-218	ENST00000487565	TBC1D2	Q9BYX2	928 aa		10.47	□□□□□ -0.73
GARNL3-218	ENST00000487565	PANK3	Q9H999	370 aa		10.47	□□□□□ -0.73
GARNL3-218	ENST00000487565	PCDHGC3	Q9UN70	934 aa		10.47	□□□□□ -0.73
GARNL3-218	ENST00000487565	POLR3A	O14802	1390 aa	Predicted RBP	10.47	□□□□□ -0.73
GARNL3-218	ENST00000487565	KTN1	Q86UP2	1357 aa	Known RBP	10.47	□□□□□ -0.73
GARNL3-218	ENST00000487565	USP6	P35125	1406 aa		10.47	□□□□□ -0.73
GARNL3-218	ENST00000487565	CPSF1	Q10570	1443 aa	Known RBP	10.47	□□□□□ -0.73
GARNL3-218	ENST00000487565	EDC4	Q6P2E9	1401 aa	Known RBP	10.47	□□□□□ -0.73
GARNL3-218	ENST00000487565	AKAP12	Q02952	1782 aa		10.47	□□□□□ -0.73
GARNL3-218	ENST00000487565	PLEKHG3	A1L390	1219 aa		10.46	□□□□□ -0.73
GARNL3-218	ENST00000487565	C6orf229	H3BNL8	230 aa		10.46	□□□□□ -0.73
GARNL3-218	ENST00000487565	MMP16	P51512	607 aa		10.46	□□□□□ -0.73
GARNL3-218	ENST00000487565	ZNF697	Q5TEC3	545 aa		10.46	□□□□□ -0.73
GARNL3-218	ENST00000487565	NGDN	Q8NEJ9	315 aa	Known RBP	10.46	□□□□□ -0.73
GARNL3-218	ENST00000487565	RGPD8	O14715	1765 aa	Predicted RBP	10.45	□□□□□ -0.74
GARNL3-218	ENST00000487565	ACE	P12821	1306 aa		10.45	□□□□□ -0.74
GARNL3-218	ENST00000487565	NRG2	O14511	850 aa	Predicted RBP	10.45	□□□□□ -0.74
GARNL3-218	ENST00000487565	DIXDC1	Q155Q3	683 aa		10.45	□□□□□ -0.74
GARNL3-218	ENST00000487565	PMFBP1	Q8TBY8	1022 aa		10.45	□□□□□ -0.74
GARNL3-218	ENST00000487565	KNSTRN	Q9Y448	316 aa		10.45	□□□□□ -0.74
GARNL3-218	ENST00000487565	BRD4	O60885	1362 aa	Predicted RBP	10.44	□□□□□ -0.74
GARNL3-218	ENST00000487565	CGNL1	Q0VF96	1302 aa		10.44	□□□□□ -0.74
GARNL3-218	ENST00000487565	DXO	O77932	396 aa	Known RBP	10.44	□□□□□ -0.74
GARNL3-218	ENST00000487565	RPIA	P49247	311 aa		10.44	□□□□□ -0.74
GARNL3-218	ENST00000487565	DIEXF	Q68CQ4	756 aa	Known RBP	10.44	□□□□□ -0.74
GARNL3-218	ENST00000487565	BRINP3	Q76B58	766 aa		10.44	□□□□□ -0.74
GARNL3-218	ENST00000487565	RETREG3	Q86VR2	466 aa		10.44	□□□□□ -0.74
GARNL3-218	ENST00000487565	ORAI2	Q96SN7	254 aa		10.44	□□□□□ -0.74
GARNL3-218	ENST00000487565	SLAIN2	Q9P270	581 aa		10.44	□□□□□ -0.74
GARNL3-218	ENST00000487565	ROBO1	Q9Y6N7	1651 aa		10.44	□□□□□ -0.74
GARNL3-218	ENST00000487565	NSD2	O96028	1365 aa		10.43	□□□□□ -0.74
GARNL3-218	ENST00000487565	NPHP3	Q7Z494	1330 aa		10.43	□□□□□ -0.74
GARNL3-218	ENST00000487565	KIF20B	Q96Q89	1820 aa		10.43	□□□□□ -0.74
GARNL3-218	ENST00000487565	ZBTB24	O43167	697 aa	Predicted RBP	10.43	□□□□□ -0.74
GARNL3-218	ENST00000487565	UBAP1L	F5GYI3	381 aa		10.42	□□□□□ -0.74
GARNL3-218	ENST00000487565	TOM1	O60784	492 aa		10.42	□□□□□ -0.74
GARNL3-218	ENST00000487565	CD2BP2	O95400	341 aa	Known RBP	10.42	□□□□□ -0.74
GARNL3-218	ENST00000487565	CCDC24	Q8N4L8	307 aa		10.42	□□□□□ -0.74
GARNL3-218	ENST00000487565	CARD14	Q9BXL6	1004 aa		10.42	□□□□□ -0.74
GARNL3-218	ENST00000487565	NHSL1	Q5SYE7	1610 aa		10.42	□□□□□ -0.74
GARNL3-218	ENST00000487565	AHDC1	Q5TGY3	1603 aa	Predicted RBP	10.42	□□□□□ -0.74
GARNL3-218	ENST00000487565	PXDN	Q92626	1479 aa		10.42	□□□□□ -0.74
GARNL3-218	ENST00000487565	NPC1L1	Q9UHC9	1359 aa		10.41	□□□□□ -0.74
GARNL3-218	ENST00000487565	TTC21A	Q8NDW8	1320 aa		10.41	□□□□□ -0.74
GARNL3-218	ENST00000487565	JUND	P17535	347 aa		10.41	□□□□□ -0.74
GARNL3-218	ENST00000487565	TRIM67	Q6ZTA4	783 aa		10.41	□□□□□ -0.74
GARNL3-218	ENST00000487565	TRPM3	Q9HCF6	1732 aa	Predicted RBP	10.41	□□□□□ -0.74
GARNL3-218	ENST00000487565	TNS3	Q68CZ2	1445 aa		10.41	□□□□□ -0.74
GARNL3-218	ENST00000487565	SSH2	Q76I76	1423 aa		10.41	□□□□□ -0.74
GARNL3-218	ENST00000487565	TTC21B	Q7Z4L5	1316 aa		10.4	□□□□□ -0.74
GARNL3-218	ENST00000487565	FOXO3	O43524	673 aa		10.4	□□□□□ -0.74
GARNL3-218	ENST00000487565	XPC	Q01831	940 aa	Predicted RBP	10.4	□□□□□ -0.74
GARNL3-218	ENST00000487565	PSME1	Q06323	249 aa		10.4	□□□□□ -0.74
GARNL3-218	ENST00000487565	RSBN1L	Q6PCB5	846 aa	Predicted RBP	10.4	□□□□□ -0.74
GARNL3-218	ENST00000487565	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	10.4	□□□□□ -0.74
GARNL3-218	ENST00000487565	ANKRD26	Q9UPS8	1709 aa		10.4	□□□□□ -0.74
GARNL3-218	ENST00000487565	PIK3C2A	O00443	1686 aa		10.4	□□□□□ -0.74
GARNL3-218	ENST00000487565	SBNO1	A3KN83	1393 aa		10.39	□□□□□ -0.75
GARNL3-218	ENST00000487565	PER1	O15534	1290 aa	Predicted RBP	10.39	□□□□□ -0.75
GARNL3-218	ENST00000487565	ANP32C	O43423	234 aa		10.39	□□□□□ -0.75
GARNL3-218	ENST00000487565	GJA5	P36382	358 aa		10.39	□□□□□ -0.75
GARNL3-218	ENST00000487565	PIP4K2B	P78356	416 aa		10.39	□□□□□ -0.75
GARNL3-218	ENST00000487565	MTMR2	Q13614	643 aa		10.39	□□□□□ -0.75
GARNL3-218	ENST00000487565	CNGB1	Q14028	1251 aa	Predicted RBP	10.39	□□□□□ -0.75
GARNL3-218	ENST00000487565	CC2D1B	Q5T0F9	858 aa	Known RBP	10.39	□□□□□ -0.75
GARNL3-218	ENST00000487565	OVOS2	A0A0J9YW53	1432 aa		10.39	□□□□□ -0.75
GARNL3-218	ENST00000487565	OVOS2	Q6IE36	1432 aa		10.39	□□□□□ -0.75
GARNL3-218	ENST00000487565	TNFRSF10A	O00220	468 aa		10.38	□□□□□ -0.75
GARNL3-218	ENST00000487565	FOXC1	Q12948	553 aa		10.38	□□□□□ -0.75
GARNL3-218	ENST00000487565	KRT28	Q7Z3Y7	464 aa		10.38	□□□□□ -0.75
GARNL3-218	ENST00000487565	RIC3	Q7Z5B4	369 aa		10.38	□□□□□ -0.75
GARNL3-218	ENST00000487565	NME9	Q86XW9	330 aa		10.38	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms