RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 PCDHB15Q9Y5E8 787 aa12.79□□□□□ -0.36
TCOF1-204ENST00000427724 ST18O60284 1047 aa12.79□□□□□ -0.36
TCOF1-204ENST00000427724 CRACR2BQ8N4Y2 399 aaPredicted RBP12.79□□□□□ -0.36
TCOF1-204ENST00000427724 RIMBP2O15034 1052 aa12.78□□□□□ -0.36
TCOF1-204ENST00000427724 DZIP1Q86YF9 867 aaKnown RBP12.78□□□□□ -0.36
TCOF1-204ENST00000427724 R3HCC1Q9Y3T6 440 aaKnown RBP12.78□□□□□ -0.36
TCOF1-204ENST00000427724 PTPRMP28827 1452 aa12.78□□□□□ -0.36
TCOF1-204ENST00000427724 ERVK-7P63135 1459 aa12.78□□□□□ -0.36
TCOF1-204ENST00000427724 ARHGAP27Q6ZUM4 889 aa12.78□□□□□ -0.36
TCOF1-204ENST00000427724 ERC1Q8IUD2 1116 aa12.78□□□□□ -0.36
TCOF1-204ENST00000427724 CARD14Q9BXL6 1004 aa12.78□□□□□ -0.36
TCOF1-204ENST00000427724 TBC1D2Q9BYX2 928 aa12.78□□□□□ -0.36
TCOF1-204ENST00000427724 IFT57Q9NWB7 429 aa12.78□□□□□ -0.36
TCOF1-204ENST00000427724 KDM4AO75164 1064 aa12.77□□□□□ -0.36
TCOF1-204ENST00000427724 AACSQ86V21 672 aa12.77□□□□□ -0.36
TCOF1-204ENST00000427724 IQSEC3Q9UPP2 1182 aaPredicted RBP12.77□□□□□ -0.36
TCOF1-204ENST00000427724 HECW2Q9P2P5 1572 aa12.77□□□□□ -0.36
TCOF1-204ENST00000427724 NSD2O96028 1365 aa12.77□□□□□ -0.36
TCOF1-204ENST00000427724 ESPNB1AK53 854 aa12.77□□□□□ -0.37
TCOF1-204ENST00000427724 SLC3A2P08195 630 aaKnown RBP12.77□□□□□ -0.37
TCOF1-204ENST00000427724 LMOD1P29536 600 aaPredicted RBP12.77□□□□□ -0.37
TCOF1-204ENST00000427724 FLIIQ13045 1269 aa12.77□□□□□ -0.37
TCOF1-204ENST00000427724 ANKRD18AQ8IVF6 992 aa12.77□□□□□ -0.37
TCOF1-204ENST00000427724 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.77□□□□□ -0.372e-6■■■□□ 17.5
TCOF1-204ENST00000427724 CHPF2Q9P2E5 772 aa12.77□□□□□ -0.37
TCOF1-204ENST00000427724 ADCY10Q96PN6 1610 aa12.77□□□□□ -0.37
TCOF1-204ENST00000427724 H0YIN7 160 aa12.76□□□□□ -0.37
TCOF1-204ENST00000427724 SEC24BO95487 1268 aa12.76□□□□□ -0.37
TCOF1-204ENST00000427724 MCM4P33991 863 aa12.76□□□□□ -0.37
TCOF1-204ENST00000427724 KDM5DQ9BY66 1539 aa12.76□□□□□ -0.37
TCOF1-204ENST00000427724 RNMTO43148 476 aaKnown RBP12.76□□□□□ -0.37
TCOF1-204ENST00000427724 CCDC152Q4G0S7 254 aa12.76□□□□□ -0.37
TCOF1-204ENST00000427724 CCDC87Q9NVE4 849 aa12.76□□□□□ -0.37
TCOF1-204ENST00000427724 ASXL1Q8IXJ9 1541 aa12.76□□□□□ -0.37
TCOF1-204ENST00000427724 JCADQ9P266 1359 aa12.76□□□□□ -0.37
TCOF1-204ENST00000427724 A1BGP04217 495 aa12.76□□□□□ -0.37
TCOF1-204ENST00000427724 SKOR2Q2VWA4 1001 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-204ENST00000427724 UTP14AQ9BVJ6 771 aaKnown RBP12.76□□□□□ -0.37
TCOF1-204ENST00000427724 NYXQ9GZU5 481 aa12.76□□□□□ -0.37
TCOF1-204ENST00000427724 MPHOSPH10O00566 681 aaKnown RBP12.75□□□□□ -0.37
TCOF1-204ENST00000427724 RLBP1P12271 317 aa12.75□□□□□ -0.37
TCOF1-204ENST00000427724 KDM5CP41229 1560 aa12.75□□□□□ -0.37
TCOF1-204ENST00000427724 MYO1BO43795 1136 aa12.75□□□□□ -0.37
TCOF1-204ENST00000427724 FAM184AQ8NB25 1140 aa12.75□□□□□ -0.37
TCOF1-204ENST00000427724 LGR6Q9HBX8 967 aa12.75□□□□□ -0.37
TCOF1-204ENST00000427724 KDM2BQ8NHM5 1336 aa12.75□□□□□ -0.37
TCOF1-204ENST00000427724 ZBTB7AO95365 584 aa12.74□□□□□ -0.37
TCOF1-204ENST00000427724 TRIM27P14373 513 aa12.74□□□□□ -0.37
TCOF1-204ENST00000427724 GJD4Q96KN9 370 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-204ENST00000427724 USP5P45974 858 aa12.74□□□□□ -0.37
TCOF1-204ENST00000427724 EN1Q05925 392 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-204ENST00000427724 KIAA2012Q0VF49 1180 aa12.74□□□□□ -0.37
TCOF1-204ENST00000427724 RNF20Q5VTR2 975 aa12.74□□□□□ -0.37
TCOF1-204ENST00000427724 PUS7Q96PZ0 661 aaKnown RBP12.74□□□□□ -0.37
TCOF1-204ENST00000427724 EXOC6BQ9Y2D4 811 aa12.74□□□□□ -0.37
TCOF1-204ENST00000427724 CHD1LQ86WJ1 897 aa12.74□□□□□ -0.37
TCOF1-204ENST00000427724 CCDC43Q96MW1 224 aaKnown RBP12.74□□□□□ -0.37
TCOF1-204ENST00000427724 NACAP1Q9BZK3 213 aa12.74□□□□□ -0.37
TCOF1-204ENST00000427724 FBXO41Q8TF61 875 aa12.74□□□□□ -0.37
TCOF1-204ENST00000427724 PHACTR3Q96KR7 559 aa12.74□□□□□ -0.37
TCOF1-204ENST00000427724 CDC45O75419 566 aa12.73□□□□□ -0.37
TCOF1-204ENST00000427724 MAP4K4O95819 1239 aaPredicted RBP12.73□□□□□ -0.37
TCOF1-204ENST00000427724 CT47B1P0C2W7 299 aaPredicted RBP12.73□□□□□ -0.37
TCOF1-204ENST00000427724 MCTP1Q6DN14 999 aa12.73□□□□□ -0.37
TCOF1-204ENST00000427724 FLAD1Q8NFF5 587 aa12.73□□□□□ -0.37
TCOF1-204ENST00000427724 MBIPQ9NS73 344 aa12.73□□□□□ -0.37
TCOF1-204ENST00000427724 REC8O95072 547 aa12.73□□□□□ -0.37
TCOF1-204ENST00000427724 POLR3DP05423 398 aaPredicted RBP12.73□□□□□ -0.37
TCOF1-204ENST00000427724 SLC5A1P13866 664 aa12.73□□□□□ -0.37
TCOF1-204ENST00000427724 CARD10Q9BWT7 1032 aa12.73□□□□□ -0.37
TCOF1-204ENST00000427724 MAST1Q9Y2H9 1570 aa12.73□□□□□ -0.37
TCOF1-204ENST00000427724 A2ML1A8K2U0 1454 aa12.73□□□□□ -0.37
TCOF1-204ENST00000427724 ZNF790Q6PG37 636 aa12.73□□□□□ -0.37
TCOF1-204ENST00000427724 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.73□□□□□ -0.37
TCOF1-204ENST00000427724 GRPEL1Q9HAV7 217 aa12.73□□□□□ -0.37
TCOF1-204ENST00000427724 VEZTQ9HBM0 779 aa12.73□□□□□ -0.37
TCOF1-204ENST00000427724 KIF3AQ9Y496 699 aa12.73□□□□□ -0.37
TCOF1-204ENST00000427724 SPATA31A3Q5VYP0 1347 aa12.73□□□□□ -0.37
TCOF1-204ENST00000427724 TPM2P07951 284 aa12.72□□□□□ -0.37
TCOF1-204ENST00000427724 TDO2P48775 406 aa12.72□□□□□ -0.37
TCOF1-204ENST00000427724 LARGE2Q8N3Y3 721 aa12.72□□□□□ -0.37
TCOF1-204ENST00000427724 BEGAINQ9BUH8 593 aa12.72□□□□□ -0.37
TCOF1-204ENST00000427724 AKAP2Q9Y2D5 859 aa12.72□□□□□ -0.37
TCOF1-204ENST00000427724 CHMP4BP1P59074 171 aa12.72□□□□□ -0.37
TCOF1-204ENST00000427724 SF3A1Q15459 793 aaKnown RBP12.72□□□□□ -0.37
TCOF1-204ENST00000427724 EAPPQ56P03 285 aaPredicted RBP12.72□□□□□ -0.37
TCOF1-204ENST00000427724 CNTROBQ8N137 903 aa12.71□□□□□ -0.37
TCOF1-204ENST00000427724 HELBQ8NG08 1087 aaPredicted RBP12.71□□□□□ -0.37
TCOF1-204ENST00000427724 TBC1D32Q96NH3 1257 aa12.71□□□□□ -0.37
TCOF1-204ENST00000427724 SNRKQ9NRH2 765 aa12.71□□□□□ -0.37
TCOF1-204ENST00000427724 HDAC9Q9UKV0 1011 aa12.71□□□□□ -0.37
TCOF1-204ENST00000427724 HCLS1P14317 486 aaPredicted RBP12.71□□□□□ -0.37
TCOF1-204ENST00000427724 ARHGEF25Q86VW2 580 aa12.71□□□□□ -0.37
TCOF1-204ENST00000427724 BCORL1Q5H9F3 1711 aa12.71□□□□□ -0.38
TCOF1-204ENST00000427724 NF2P35240 595 aa12.71□□□□□ -0.38
TCOF1-204ENST00000427724 NASPP49321 788 aaPredicted RBP12.71□□□□□ -0.38
TCOF1-204ENST00000427724 PANK2Q9BZ23 570 aa12.71□□□□□ -0.38
TCOF1-204ENST00000427724 BLMP54132 1417 aaPredicted RBP12.71□□□□□ -0.38
TCOF1-204ENST00000427724 LOC102724428A0A0B4J2F2 783 aa12.71□□□□□ -0.38
TCOF1-204ENST00000427724 H3BQV1 296 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms