RNA–Protein interactions for RNA: ENST00000426763.3

RPL28-202, Transcript of ribosomal protein L28, humanhuman

TSL 1 (best)

Gene RPL28, Length 5,620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-202ENST00000426763 U3KPZ7 1027 aaPredicted RBP16.45■□□□□ 0.22
RPL28-202ENST00000426763 XAGE3Q8WTP9 111 aa16.45■□□□□ 0.22
RPL28-202ENST00000426763 MAGI2Q86UL8 1455 aa16.45■□□□□ 0.22
RPL28-202ENST00000426763 PCDH11XQ9BZA7 1347 aa16.45■□□□□ 0.22
RPL28-202ENST00000426763 PCDH11YQ9BZA8 1340 aa16.45■□□□□ 0.22
RPL28-202ENST00000426763 K7ELQ4 463 aaPredicted RBP16.45■□□□□ 0.22
RPL28-202ENST00000426763 NBPF6Q5VWK0 638 aa16.45■□□□□ 0.22
RPL28-202ENST00000426763 NBPF5PQ86XG9 351 aaPredicted RBP16.45■□□□□ 0.22
RPL28-202ENST00000426763 SLF2Q8IX21 1173 aa16.45■□□□□ 0.22
RPL28-202ENST00000426763 JMYQ8N9B5 988 aa16.45■□□□□ 0.22
RPL28-202ENST00000426763 NBPF4Q96M43 638 aa16.45■□□□□ 0.22
RPL28-202ENST00000426763 MBD5Q9P267 1494 aa16.45■□□□□ 0.22
RPL28-202ENST00000426763 NAT10Q9H0A0 1025 aaKnown RBP16.44■□□□□ 0.22
RPL28-202ENST00000426763 BTG4Q9NY30 223 aa16.44■□□□□ 0.22
RPL28-202ENST00000426763 C6orf229H3BNL8 230 aa16.44■□□□□ 0.22
RPL28-202ENST00000426763 COPS6Q7L5N1 327 aa16.44■□□□□ 0.22
RPL28-202ENST00000426763 CDCA7Q9BWT1 371 aaPredicted RBP16.44■□□□□ 0.22
RPL28-202ENST00000426763 POLR3DP05423 398 aaPredicted RBP16.43■□□□□ 0.22
RPL28-202ENST00000426763 CCDC152Q4G0S7 254 aa16.43■□□□□ 0.22
RPL28-202ENST00000426763 KINO60870 393 aaKnown RBP16.43■□□□□ 0.22
RPL28-202ENST00000426763 ZCCHC11Q5TAX3 1644 aaKnown RBP16.43■□□□□ 0.22
RPL28-202ENST00000426763 MBD3O95983 291 aa16.43■□□□□ 0.22
RPL28-202ENST00000426763 NFATC2IPQ8NCF5 419 aa16.43■□□□□ 0.22
RPL28-202ENST00000426763 PDE4CQ08493 712 aa16.42■□□□□ 0.22
RPL28-202ENST00000426763 NAPBQ9H115 298 aa16.42■□□□□ 0.22
RPL28-202ENST00000426763 SBNO1A3KN83 1393 aa16.42■□□□□ 0.22
RPL28-202ENST00000426763 SIRT1Q96EB6 747 aa16.42■□□□□ 0.22
RPL28-202ENST00000426763 ALDH1L1O75891 902 aa16.42■□□□□ 0.22
RPL28-202ENST00000426763 SETDB2Q96T68 719 aa16.42■□□□□ 0.22
RPL28-202ENST00000426763 WDR33Q9C0J8 1336 aaKnown RBP16.42■□□□□ 0.22
RPL28-202ENST00000426763 ECHDC1Q9NTX5 307 aa16.42■□□□□ 0.22
RPL28-202ENST00000426763 ARHGEF10O15013 1369 aa16.42■□□□□ 0.22
RPL28-202ENST00000426763 CRACR2BQ8N4Y2 399 aaPredicted RBP16.42■□□□□ 0.22
RPL28-202ENST00000426763 SAMD9LQ8IVG5 1584 aa16.41■□□□□ 0.22
RPL28-202ENST00000426763 MLH3Q9UHC1 1453 aa16.41■□□□□ 0.22
RPL28-202ENST00000426763 KSR2Q6VAB6 950 aa16.41■□□□□ 0.22
RPL28-202ENST00000426763 NOL7Q9UMY1 257 aaKnown RBP16.41■□□□□ 0.22
RPL28-202ENST00000426763 TTF1Q15361 905 aaPredicted RBP16.41■□□□□ 0.22
RPL28-202ENST00000426763 LTKP29376 864 aa16.41■□□□□ 0.22
RPL28-202ENST00000426763 LARP1BQ659C4 914 aaKnown RBP16.41■□□□□ 0.22
RPL28-202ENST00000426763 WASF1Q92558 559 aa16.41■□□□□ 0.22
RPL28-202ENST00000426763 ZNF219Q9P2Y4 722 aaPredicted RBP16.41■□□□□ 0.22
RPL28-202ENST00000426763 GCC2Q8IWJ2 1684 aa16.41■□□□□ 0.22
RPL28-202ENST00000426763 LETM1O95202 739 aaPredicted RBP16.41■□□□□ 0.22
RPL28-202ENST00000426763 R3HCC1Q9Y3T6 440 aaKnown RBP16.41■□□□□ 0.22
RPL28-202ENST00000426763 C8orf58Q8NAV2 365 aa16.4■□□□□ 0.22
RPL28-202ENST00000426763 SLAIN2Q9P270 581 aa16.4■□□□□ 0.22
RPL28-202ENST00000426763 MINDY4BA8MYZ0 360 aa16.4■□□□□ 0.22
RPL28-202ENST00000426763 MKNK2Q9HBH9 465 aa16.4■□□□□ 0.22
RPL28-202ENST00000426763 FIBPO43427 364 aa16.4■□□□□ 0.22
RPL28-202ENST00000426763 CASTP20810 708 aaKnown RBP16.4■□□□□ 0.22
RPL28-202ENST00000426763 EVI5LQ96CN4 794 aa16.4■□□□□ 0.22
RPL28-202ENST00000426763 TTC37Q6PGP7 1564 aa16.4■□□□□ 0.22
RPL28-202ENST00000426763 MPHOSPH10O00566 681 aaKnown RBP16.39■□□□□ 0.22
RPL28-202ENST00000426763 RNMTO43148 476 aaKnown RBP16.39■□□□□ 0.22
RPL28-202ENST00000426763 ZNF622Q969S3 477 aaKnown RBP eCLIP16.39■□□□□ 0.22
RPL28-202ENST00000426763 PLEKHH1Q9ULM0 1364 aa16.39■□□□□ 0.21
RPL28-202ENST00000426763 KDM5DQ9BY66 1539 aa16.39■□□□□ 0.21
RPL28-202ENST00000426763 PRPF40BQ6NWY9 871 aaKnown RBP16.39■□□□□ 0.21
RPL28-202ENST00000426763 LDHCP07864 332 aa16.39■□□□□ 0.21
RPL28-202ENST00000426763 CEBPZQ03701 1054 aaKnown RBP16.39■□□□□ 0.21
RPL28-202ENST00000426763 MRPL50Q8N5N7 158 aaKnown RBP16.38■□□□□ 0.21
RPL28-202ENST00000426763 NPC1L1Q9UHC9 1359 aa16.38■□□□□ 0.21
RPL28-202ENST00000426763 PDIA4P13667 645 aaKnown RBP16.38■□□□□ 0.21
RPL28-202ENST00000426763 KRT18P05783 430 aaKnown RBP16.38■□□□□ 0.21
RPL28-202ENST00000426763 RSPH6AQ9H0K4 717 aa16.38■□□□□ 0.21
RPL28-202ENST00000426763 EPS15P42566 896 aa16.38■□□□□ 0.21
RPL28-202ENST00000426763 NFKBIBQ15653 356 aa16.37■□□□□ 0.21
RPL28-202ENST00000426763 JARID2Q92833 1246 aaPredicted RBP16.37■□□□□ 0.21
RPL28-202ENST00000426763 PLEKHG3A1L390 1219 aa16.37■□□□□ 0.21
RPL28-202ENST00000426763 GRM8O00222 908 aa16.37■□□□□ 0.21
RPL28-202ENST00000426763 DZIP3Q86Y13 1208 aaKnown RBP16.37■□□□□ 0.21
RPL28-202ENST00000426763 ANKRD18AQ8IVF6 992 aa16.37■□□□□ 0.21
RPL28-202ENST00000426763 NLRP3Q96P20 1036 aa16.37■□□□□ 0.21
RPL28-202ENST00000426763 UQCRFS1P1P0C7P4 283 aa16.37■□□□□ 0.21
RPL28-202ENST00000426763 KRT85P78386 507 aa16.37■□□□□ 0.21
RPL28-202ENST00000426763 NIP7Q9Y221 180 aaKnown RBP eCLIP16.37■□□□□ 0.21
RPL28-202ENST00000426763 SOS1Q07889 1333 aaPredicted RBP16.37■□□□□ 0.21
RPL28-202ENST00000426763 PRPF40AO75400 957 aaKnown RBP16.37■□□□□ 0.21
RPL28-202ENST00000426763 SPTY2D1Q68D10 685 aaPredicted RBP16.37■□□□□ 0.21
RPL28-202ENST00000426763 PHACTR3Q96KR7 559 aa16.37■□□□□ 0.21
RPL28-202ENST00000426763 RNF41Q9H4P4 317 aaPredicted RBP16.37■□□□□ 0.21
RPL28-202ENST00000426763 RTCBQ9Y3I0 505 aaKnown RBP16.37■□□□□ 0.21
RPL28-202ENST00000426763 EFCAB6Q5THR3 1501 aa16.37■□□□□ 0.21
RPL28-202ENST00000426763 NYXQ9GZU5 481 aa16.37■□□□□ 0.21
RPL28-202ENST00000426763 PER1O15534 1290 aaPredicted RBP16.36■□□□□ 0.21
RPL28-202ENST00000426763 HMGB1P09429 215 aaKnown RBP16.36■□□□□ 0.21
RPL28-202ENST00000426763 UTP14AQ9BVJ6 771 aaKnown RBP16.36■□□□□ 0.21
RPL28-202ENST00000426763 PREX2Q70Z35 1606 aa16.36■□□□□ 0.21
RPL28-202ENST00000426763 GOLIM4O00461 696 aa16.36■□□□□ 0.21
RPL28-202ENST00000426763 ZNF213O14771 459 aa16.35■□□□□ 0.21
RPL28-202ENST00000426763 MEIS3Q99687 375 aa16.35■□□□□ 0.21
RPL28-202ENST00000426763 ZNF444Q8N0Y2 327 aaPredicted RBP16.35■□□□□ 0.21
RPL28-202ENST00000426763 TSPOAP1O95153 1857 aa16.35■□□□□ 0.21
RPL28-202ENST00000426763 CFAP65Q6ZU64 1925 aaKnown RBP16.35■□□□□ 0.21
RPL28-202ENST00000426763 HECW2Q9P2P5 1572 aa16.35■□□□□ 0.21
RPL28-202ENST00000426763 ME1P48163 572 aa16.35■□□□□ 0.21
RPL28-202ENST00000426763 LINS1Q8NG48 757 aa16.35■□□□□ 0.21
RPL28-202ENST00000426763 TMEM132AQ24JP5 1023 aa16.34■□□□□ 0.21
RPL28-202ENST00000426763 IQCA1Q86XH1 822 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms