RNA–Protein interactions for RNA: ENST00000398587.6

PCDHGA11-201, Transcript of protocadherin gamma subfamily A, 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGA11, Length 4,647 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11-201ENST00000398587 ALDH1L1O75891 902 aa16.78■□□□□ 0.28
PCDHGA11-201ENST00000398587 HMGB1P09429 215 aaKnown RBP16.78■□□□□ 0.28
PCDHGA11-201ENST00000398587 HMGB2P26583 209 aaKnown RBP16.78■□□□□ 0.28
PCDHGA11-201ENST00000398587 EYA1Q99502 592 aa16.78■□□□□ 0.28
PCDHGA11-201ENST00000398587 CWC25Q9NXE8 425 aaPredicted RBP16.78■□□□□ 0.28
PCDHGA11-201ENST00000398587 ABCF2Q9UG63 623 aa16.78■□□□□ 0.28
PCDHGA11-201ENST00000398587 STK11IPQ8N1F8 1099 aa16.78■□□□□ 0.28
PCDHGA11-201ENST00000398587 SPINK5Q9NQ38 1064 aaPredicted RBP16.78■□□□□ 0.28
PCDHGA11-201ENST00000398587 TNNQ9UQP3 1299 aa16.78■□□□□ 0.28
PCDHGA11-201ENST00000398587 MAP3K19Q56UN5 1328 aa16.78■□□□□ 0.28
PCDHGA11-201ENST00000398587 KCNA6P17658 529 aa16.77■□□□□ 0.28
PCDHGA11-201ENST00000398587 BICDL1Q6ZP65 573 aa16.77■□□□□ 0.28
PCDHGA11-201ENST00000398587 IL27Q8NEV9 243 aa16.77■□□□□ 0.28
PCDHGA11-201ENST00000398587 NUP62CLQ9H1M0 184 aa16.77■□□□□ 0.28
PCDHGA11-201ENST00000398587 ABCA8O94911 1581 aa16.77■□□□□ 0.28
PCDHGA11-201ENST00000398587 SMC2O95347 1197 aa16.77■□□□□ 0.28
PCDHGA11-201ENST00000398587 DDX11Q96FC9 970 aa16.77■□□□□ 0.28
PCDHGA11-201ENST00000398587 FAM13BQ9NYF5 915 aa16.77■□□□□ 0.28
PCDHGA11-201ENST00000398587 GPS2Q13227 327 aa16.77■□□□□ 0.28
PCDHGA11-201ENST00000398587 SAMD1Q6SPF0 538 aaPredicted RBP16.77■□□□□ 0.28
PCDHGA11-201ENST00000398587 ZBTB40Q9NUA8 1239 aa16.77■□□□□ 0.28
PCDHGA11-201ENST00000398587 ATP5J2-PTCD1G3V325 749 aa16.77■□□□□ 0.27
PCDHGA11-201ENST00000398587 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.77■□□□□ 0.27
PCDHGA11-201ENST00000398587 NCKAP5LQ9HCH0 1330 aa16.77■□□□□ 0.27
PCDHGA11-201ENST00000398587 NEO1Q92859 1461 aa16.76■□□□□ 0.27
PCDHGA11-201ENST00000398587 ANKRD18BA2A2Z9 1011 aa16.76■□□□□ 0.27
PCDHGA11-201ENST00000398587 SDSP20132 328 aa16.76■□□□□ 0.27
PCDHGA11-201ENST00000398587 ATP8B2P98198 1209 aa16.76■□□□□ 0.27
PCDHGA11-201ENST00000398587 FERMT3Q86UX7 667 aa16.76■□□□□ 0.27
PCDHGA11-201ENST00000398587 DMRT2Q9Y5R5 561 aa16.76■□□□□ 0.27
PCDHGA11-201ENST00000398587 PDE1AP54750 535 aa16.76■□□□□ 0.27
PCDHGA11-201ENST00000398587 SMC5Q8IY18 1101 aa16.76■□□□□ 0.27
PCDHGA11-201ENST00000398587 PDILTQ8N807 584 aa16.76■□□□□ 0.27
PCDHGA11-201ENST00000398587 WASF1Q92558 559 aa16.76■□□□□ 0.27
PCDHGA11-201ENST00000398587 R3HCC1Q9Y3T6 440 aaKnown RBP16.76■□□□□ 0.27
PCDHGA11-201ENST00000398587 EDC4Q6P2E9 1401 aaKnown RBP16.76■□□□□ 0.27
PCDHGA11-201ENST00000398587 ADAMTS2O95450 1211 aa16.76■□□□□ 0.27
PCDHGA11-201ENST00000398587 PIP4K2AP48426 406 aaPredicted RBP16.76■□□□□ 0.27
PCDHGA11-201ENST00000398587 FILIP1LQ4L180 1135 aa16.76■□□□□ 0.27
PCDHGA11-201ENST00000398587 PTPRTO14522 1441 aa16.76■□□□□ 0.27
PCDHGA11-201ENST00000398587 C19orf44Q9H6X5 657 aa16.76■□□□□ 0.27
PCDHGA11-201ENST00000398587 NOL7Q9UMY1 257 aaKnown RBP16.76■□□□□ 0.27
PCDHGA11-201ENST00000398587 KSR2Q6VAB6 950 aa16.75■□□□□ 0.27
PCDHGA11-201ENST00000398587 TNPO1Q92973 898 aaKnown RBP16.75■□□□□ 0.27
PCDHGA11-201ENST00000398587 SCAND2PQ9GZW5 306 aaPredicted RBP16.75■□□□□ 0.27
PCDHGA11-201ENST00000398587 SSFA2P28290 1259 aa16.75■□□□□ 0.27
PCDHGA11-201ENST00000398587 MAP3K12Q12852 859 aa16.75■□□□□ 0.27
PCDHGA11-201ENST00000398587 MNS1Q8NEH6 495 aa16.75■□□□□ 0.27
PCDHGA11-201ENST00000398587 DHX8Q14562 1220 aaKnown RBP16.74■□□□□ 0.27
PCDHGA11-201ENST00000398587 DCTPP1Q9H773 170 aa16.74■□□□□ 0.27
PCDHGA11-201ENST00000398587 TSHZ3Q63HK5 1081 aa16.74■□□□□ 0.27
PCDHGA11-201ENST00000398587 CAVIN4Q5BKX8 364 aa16.74■□□□□ 0.27
PCDHGA11-201ENST00000398587 SOS1Q07889 1333 aaPredicted RBP16.74■□□□□ 0.27
PCDHGA11-201ENST00000398587 C8orf34Q49A92 452 aa16.74■□□□□ 0.27
PCDHGA11-201ENST00000398587 NCBP3Q53F19 620 aaKnown RBP16.74■□□□□ 0.27
PCDHGA11-201ENST00000398587 ZCRB1Q8TBF4 217 aaKnown RBP16.74■□□□□ 0.27
PCDHGA11-201ENST00000398587 XAGE3Q8WTP9 111 aa16.74■□□□□ 0.27
PCDHGA11-201ENST00000398587 GCP02774 474 aa16.73■□□□□ 0.27
PCDHGA11-201ENST00000398587 CDK5RAP3Q96JB5 506 aa16.73■□□□□ 0.27
PCDHGA11-201ENST00000398587 NAPBQ9H115 298 aa16.73■□□□□ 0.27
PCDHGA11-201ENST00000398587 SLC5A1P13866 664 aa16.73■□□□□ 0.27
PCDHGA11-201ENST00000398587 GPTP24298 496 aa16.73■□□□□ 0.27
PCDHGA11-201ENST00000398587 HMGN5P82970 282 aaKnown RBP16.73■□□□□ 0.27
PCDHGA11-201ENST00000398587 COPS6Q7L5N1 327 aa16.73■□□□□ 0.27
PCDHGA11-201ENST00000398587 MAP3K5Q99683 1374 aa16.73■□□□□ 0.27
PCDHGA11-201ENST00000398587 GRM8O00222 908 aa16.73■□□□□ 0.27
PCDHGA11-201ENST00000398587 IL13P35225 146 aa16.73■□□□□ 0.27
PCDHGA11-201ENST00000398587 LDHAL6AQ6ZMR3 332 aa16.73■□□□□ 0.27
PCDHGA11-201ENST00000398587 CEP57L1Q8IYX8 460 aa16.73■□□□□ 0.27
PCDHGA11-201ENST00000398587 SBNO2Q9Y2G9 1366 aa16.73■□□□□ 0.27
PCDHGA11-201ENST00000398587 ZPR1O75312 459 aa16.73■□□□□ 0.27
PCDHGA11-201ENST00000398587 DACH1Q9UI36 760 aa16.73■□□□□ 0.27
PCDHGA11-201ENST00000398587 LINS1Q8NG48 757 aa16.72■□□□□ 0.27
PCDHGA11-201ENST00000398587 HOXC9P31274 260 aa16.72■□□□□ 0.27
PCDHGA11-201ENST00000398587 MAP3K11Q16584 847 aa16.72■□□□□ 0.27
PCDHGA11-201ENST00000398587 KRT24Q2M2I5 525 aa16.72■□□□□ 0.27
PCDHGA11-201ENST00000398587 SPC24Q8NBT2 197 aa16.72■□□□□ 0.27
PCDHGA11-201ENST00000398587 IP6K1Q92551 441 aa16.72■□□□□ 0.27
PCDHGA11-201ENST00000398587 LRRC59Q96AG4 307 aaKnown RBP16.72■□□□□ 0.27
PCDHGA11-201ENST00000398587 ZMYM4Q5VZL5 1548 aa16.71■□□□□ 0.27
PCDHGA11-201ENST00000398587 SYCE3A1L190 88 aa16.71■□□□□ 0.27
PCDHGA11-201ENST00000398587 PDE4CQ08493 712 aa16.71■□□□□ 0.27
PCDHGA11-201ENST00000398587 SLC39A6Q13433 755 aa16.71■□□□□ 0.27
PCDHGA11-201ENST00000398587 SOGA3Q5TF21 947 aa16.71■□□□□ 0.27
PCDHGA11-201ENST00000398587 KLHL34Q8N239 644 aa16.71■□□□□ 0.27
PCDHGA11-201ENST00000398587 ZNF213O14771 459 aa16.71■□□□□ 0.27
PCDHGA11-201ENST00000398587 CEP85Q6P2H3 762 aa16.71■□□□□ 0.27
PCDHGA11-201ENST00000398587 GOLIM4O00461 696 aa16.71■□□□□ 0.26
PCDHGA11-201ENST00000398587 ATP2B2Q01814 1243 aa16.71■□□□□ 0.26
PCDHGA11-201ENST00000398587 SERPINC1P01008 464 aa16.7■□□□□ 0.26
PCDHGA11-201ENST00000398587 ARGLU1Q9NWB6 273 aaPredicted RBP16.7■□□□□ 0.26
PCDHGA11-201ENST00000398587 HMG20BQ9P0W2 317 aa16.7■□□□□ 0.26
PCDHGA11-201ENST00000398587 CCDC196A0A1B0GTZ2 297 aa16.7■□□□□ 0.26
PCDHGA11-201ENST00000398587 CCP110O43303 1012 aa16.7■□□□□ 0.26
PCDHGA11-201ENST00000398587 MYO5CQ9NQX4 1742 aa16.7■□□□□ 0.26
PCDHGA11-201ENST00000398587 OFD1O75665 1012 aa16.69■□□□□ 0.26
PCDHGA11-201ENST00000398587 BLMP54132 1417 aaPredicted RBP16.69■□□□□ 0.26
PCDHGA11-201ENST00000398587 ESPNB1AK53 854 aa16.69■□□□□ 0.26
PCDHGA11-201ENST00000398587 ANAPC15P60006 121 aa16.69■□□□□ 0.26
PCDHGA11-201ENST00000398587 SMARCE1Q969G3 411 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms