RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 LARP6Q9BRS8 491 aaKnown RBP13.29□□□□□ -0.28
TTC28-201ENST00000397906 FERMT3Q86UX7 667 aa13.29□□□□□ -0.28
TTC28-201ENST00000397906 MYO1BO43795 1136 aa13.29□□□□□ -0.28
TTC28-201ENST00000397906 FAM83GA6ND36 823 aa13.29□□□□□ -0.28
TTC28-201ENST00000397906 MBD3O95983 291 aa13.29□□□□□ -0.28
TTC28-201ENST00000397906 DESP17661 470 aa13.29□□□□□ -0.28
TTC28-201ENST00000397906 PPP1R42Q7Z4L9 355 aa13.29□□□□□ -0.28
TTC28-201ENST00000397906 HSPA2P54652 639 aa13.29□□□□□ -0.28
TTC28-201ENST00000397906 LDHAL6AQ6ZMR3 332 aa13.29□□□□□ -0.28
TTC28-201ENST00000397906 SLF2Q8IX21 1173 aa13.29□□□□□ -0.28
TTC28-201ENST00000397906 GOLIM4O00461 696 aa13.29□□□□□ -0.28
TTC28-201ENST00000397906 IQCA1Q86XH1 822 aa13.29□□□□□ -0.28
TTC28-201ENST00000397906 SEPT7Q16181 437 aaKnown RBP13.28□□□□□ -0.28
TTC28-201ENST00000397906 RPAP2Q8IXW5 612 aaPredicted RBP13.28□□□□□ -0.28
TTC28-201ENST00000397906 PRXQ9BXM0 1461 aa13.28□□□□□ -0.28
TTC28-201ENST00000397906 LUC7LQ9NQ29 371 aaKnown RBP13.28□□□□□ -0.28
TTC28-201ENST00000397906 AXDND1Q5T1B0 1012 aaPredicted RBP13.28□□□□□ -0.28
TTC28-201ENST00000397906 ZNF213O14771 459 aa13.28□□□□□ -0.28
TTC28-201ENST00000397906 ANXA1P04083 346 aa13.28□□□□□ -0.28
TTC28-201ENST00000397906 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.28□□□□□ -0.28
TTC28-201ENST00000397906 CDC5LQ99459 802 aaKnown RBP13.28□□□□□ -0.28
TTC28-201ENST00000397906 PPFIA3O75145 1194 aa13.28□□□□□ -0.28
TTC28-201ENST00000397906 DBF4Q9UBU7 674 aaPredicted RBP13.28□□□□□ -0.28
TTC28-201ENST00000397906 CTCFLQ8NI51 663 aaPredicted RBP13.28□□□□□ -0.28
TTC28-201ENST00000397906 CENPHQ9H3R5 247 aa13.28□□□□□ -0.28
TTC28-201ENST00000397906 CWC25Q9NXE8 425 aaPredicted RBP13.28□□□□□ -0.28
TTC28-201ENST00000397906 ENOX2Q16206 610 aaKnown RBP13.27□□□□□ -0.28
TTC28-201ENST00000397906 RAB11FIP3O75154 756 aa13.27□□□□□ -0.28
TTC28-201ENST00000397906 EIF5P55010 431 aaKnown RBP13.27□□□□□ -0.28
TTC28-201ENST00000397906 SAMM50Q9Y512 469 aa13.27□□□□□ -0.28
TTC28-201ENST00000397906 TNRQ92752 1358 aa13.27□□□□□ -0.28
TTC28-201ENST00000397906 IQSEC3Q9UPP2 1182 aaPredicted RBP13.27□□□□□ -0.28
TTC28-201ENST00000397906 C16orf71Q8IYS4 520 aaPredicted RBP13.27□□□□□ -0.29
TTC28-201ENST00000397906 CFAP45Q9UL16 551 aa13.27□□□□□ -0.29
TTC28-201ENST00000397906 CEP131Q9UPN4 1083 aa13.27□□□□□ -0.29
TTC28-201ENST00000397906 GLRX3O76003 335 aaKnown RBP13.27□□□□□ -0.29
TTC28-201ENST00000397906 PICALMQ13492 652 aa13.27□□□□□ -0.29
TTC28-201ENST00000397906 KLHL10Q6JEL2 608 aa13.27□□□□□ -0.29
TTC28-201ENST00000397906 RAB11FIP4Q86YS3 637 aa13.27□□□□□ -0.29
TTC28-201ENST00000397906 SSH1Q8WYL5 1049 aa13.27□□□□□ -0.29
TTC28-201ENST00000397906 VTI1AQ96AJ9 217 aa13.27□□□□□ -0.29
TTC28-201ENST00000397906 KAT6BQ8WYB5 2073 aa13.27□□□□□ -0.29
TTC28-201ENST00000397906 PPP1R12BO60237 982 aaPredicted RBP13.26□□□□□ -0.29
TTC28-201ENST00000397906 ERLIN2O94905 339 aa13.26□□□□□ -0.29
TTC28-201ENST00000397906 SETDB2Q96T68 719 aa13.26□□□□□ -0.29
TTC28-201ENST00000397906 UPF3BQ9BZI7 483 aaKnown RBP13.26□□□□□ -0.29
TTC28-201ENST00000397906 ZCRB1Q8TBF4 217 aaKnown RBP13.26□□□□□ -0.29
TTC28-201ENST00000397906 TTC16Q8NEE8 873 aa13.26□□□□□ -0.29
TTC28-201ENST00000397906 TFCP2L1Q9NZI6 479 aa13.26□□□□□ -0.29
TTC28-201ENST00000397906 ABCA10Q8WWZ4 1543 aa13.26□□□□□ -0.29
TTC28-201ENST00000397906 IFIT3O14879 490 aaKnown RBP13.26□□□□□ -0.29
TTC28-201ENST00000397906 FANCIQ9NVI1 1328 aa13.26□□□□□ -0.29
TTC28-201ENST00000397906 CCT2P78371 535 aaKnown RBP13.25□□□□□ -0.29
TTC28-201ENST00000397906 RBM26Q5T8P6 1007 aaKnown RBP13.25□□□□□ -0.29
TTC28-201ENST00000397906 SLFN5Q08AF3 891 aa13.25□□□□□ -0.29
TTC28-201ENST00000397906 ZNF608Q9ULD9 1512 aaPredicted RBP13.25□□□□□ -0.29
TTC28-201ENST00000397906 HAND2P61296 217 aa13.25□□□□□ -0.29
TTC28-201ENST00000397906 FLIIQ13045 1269 aa13.25□□□□□ -0.29
TTC28-201ENST00000397906 NLRP5P59047 1200 aa13.25□□□□□ -0.29
TTC28-201ENST00000397906 DHX37Q8IY37 1157 aaKnown RBP13.25□□□□□ -0.29
TTC28-201ENST00000397906 SLC39A6Q13433 755 aa13.25□□□□□ -0.29
TTC28-201ENST00000397906 MAP7D2Q96T17 732 aa13.25□□□□□ -0.29
TTC28-201ENST00000397906 TSHZ3Q63HK5 1081 aa13.25□□□□□ -0.29
TTC28-201ENST00000397906 RSPH6AQ9H0K4 717 aa13.25□□□□□ -0.29
TTC28-201ENST00000397906 TAX1BP1Q86VP1 789 aa13.25□□□□□ -0.29
TTC28-201ENST00000397906 DRC1Q96MC2 740 aa13.25□□□□□ -0.29
TTC28-201ENST00000397906 CCP110O43303 1012 aa13.24□□□□□ -0.29
TTC28-201ENST00000397906 ZSCAN31Q96LW9 406 aaPredicted RBP13.24□□□□□ -0.29
TTC28-201ENST00000397906 CABP5Q9NP86 173 aa13.24□□□□□ -0.29
TTC28-201ENST00000397906 HLA-DOAP06340 250 aa13.24□□□□□ -0.29
TTC28-201ENST00000397906 TSPY2A6NKD2 308 aa13.24□□□□□ -0.29
TTC28-201ENST00000397906 DDB1Q16531 1140 aa13.24□□□□□ -0.29
TTC28-201ENST00000397906 MRE11P49959 708 aa13.24□□□□□ -0.29
TTC28-201ENST00000397906 GOLGA8AA7E2F4 631 aa13.24□□□□□ -0.29
TTC28-201ENST00000397906 GOLGA8BA8MQT2 603 aa13.24□□□□□ -0.29
TTC28-201ENST00000397906 SSRP1Q08945 709 aaKnown RBP13.24□□□□□ -0.29
TTC28-201ENST00000397906 KIAA1328Q86T90 577 aa13.24□□□□□ -0.29
TTC28-201ENST00000397906 ERCC4Q92889 916 aaPredicted RBP13.24□□□□□ -0.29
TTC28-201ENST00000397906 NUP62CLQ9H1M0 184 aa13.24□□□□□ -0.29
TTC28-201ENST00000397906 FAM193AP78312 1265 aa13.23□□□□□ -0.29
TTC28-201ENST00000397906 NCKAP5LQ9HCH0 1330 aa13.23□□□□□ -0.29
TTC28-201ENST00000397906 TEX13AQ9BXU3 409 aaPredicted RBP13.23□□□□□ -0.29
TTC28-201ENST00000397906 CATIPQ7Z7H3 387 aa13.23□□□□□ -0.29
TTC28-201ENST00000397906 CCDC194A0A1B0GVG4 234 aa13.23□□□□□ -0.29
TTC28-201ENST00000397906 CCDC152Q4G0S7 254 aa13.23□□□□□ -0.29
TTC28-201ENST00000397906 EHMT1Q9H9B1 1298 aa13.23□□□□□ -0.29
TTC28-201ENST00000397906 TTC21BQ7Z4L5 1316 aa13.23□□□□□ -0.29
TTC28-201ENST00000397906 GOLGA6L10A6NI86 522 aa13.23□□□□□ -0.29
TTC28-201ENST00000397906 CCDC196A0A1B0GTZ2 297 aa13.22□□□□□ -0.29
TTC28-201ENST00000397906 BAG3O95817 575 aa13.22□□□□□ -0.29
TTC28-201ENST00000397906 CHPF2Q9P2E5 772 aa13.22□□□□□ -0.29
TTC28-201ENST00000397906 PI4KAP2A4QPH2 592 aa13.22□□□□□ -0.29
TTC28-201ENST00000397906 PI4KAP1Q8N8J0 262 aa13.22□□□□□ -0.29
TTC28-201ENST00000397906 C8orf76Q96K31 380 aa13.22□□□□□ -0.29
TTC28-201ENST00000397906 VEZTQ9HBM0 779 aa13.22□□□□□ -0.29
TTC28-201ENST00000397906 CBFA2T2O43439 604 aa13.22□□□□□ -0.29
TTC28-201ENST00000397906 POTEJP0CG39 1038 aa13.22□□□□□ -0.29
TTC28-201ENST00000397906 H0YHG0 523 aa13.22□□□□□ -0.29
TTC28-201ENST00000397906 SNRPA1P09661 255 aaKnown RBP13.22□□□□□ -0.29
TTC28-201ENST00000397906 RNF41Q9H4P4 317 aaPredicted RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms