RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 FAM177BA6PVY3 158 aa19.25■□□□□ 0.67
PCDH1-203ENST00000394536 DNM1Q05193 864 aaKnown RBP19.25■□□□□ 0.67
PCDH1-203ENST00000394536 TNMDQ9H2S6 317 aa19.25■□□□□ 0.67
PCDH1-203ENST00000394536 NLRP2Q9NX02 1062 aa19.25■□□□□ 0.67
PCDH1-203ENST00000394536 IQSEC2Q5JU85 1478 aa19.25■□□□□ 0.67
PCDH1-203ENST00000394536 C17orf53Q8N3J3 647 aaPredicted RBP19.25■□□□□ 0.67
PCDH1-203ENST00000394536 MAP7D2Q96T17 732 aa19.25■□□□□ 0.67
PCDH1-203ENST00000394536 GNL2Q13823 731 aaKnown RBP19.24■□□□□ 0.67
PCDH1-203ENST00000394536 PPP1R9BQ96SB3 815 aa19.24■□□□□ 0.67
PCDH1-203ENST00000394536 NOL7Q9UMY1 257 aaKnown RBP19.24■□□□□ 0.67
PCDH1-203ENST00000394536 ZSCAN22P10073 491 aaPredicted RBP19.24■□□□□ 0.67
PCDH1-203ENST00000394536 PLEKHO1Q53GL0 409 aaPredicted RBP19.24■□□□□ 0.67
PCDH1-203ENST00000394536 ANAPC15P60006 121 aa19.24■□□□□ 0.67
PCDH1-203ENST00000394536 FAM135BQ49AJ0 1406 aa19.23■□□□□ 0.67
PCDH1-203ENST00000394536 PDCP20941 246 aa19.23■□□□□ 0.67
PCDH1-203ENST00000394536 PIK3R4Q99570 1358 aa19.23■□□□□ 0.67
PCDH1-203ENST00000394536 KDM4AO75164 1064 aa19.22■□□□□ 0.67
PCDH1-203ENST00000394536 NBPF7P0C2Y1 421 aaPredicted RBP19.22■□□□□ 0.67
PCDH1-203ENST00000394536 SYT1P21579 422 aa19.22■□□□□ 0.67
PCDH1-203ENST00000394536 FAM173BQ6P4H8 233 aa19.22■□□□□ 0.67
PCDH1-203ENST00000394536 SPATA32Q96LK8 384 aa19.22■□□□□ 0.67
PCDH1-203ENST00000394536 NUP62CLQ9H1M0 184 aa19.22■□□□□ 0.67
PCDH1-203ENST00000394536 TULP4Q9NRJ4 1543 aa19.22■□□□□ 0.67
PCDH1-203ENST00000394536 ECHDC1Q9NTX5 307 aa19.22■□□□□ 0.67
PCDH1-203ENST00000394536 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.22■□□□□ 0.67
PCDH1-203ENST00000394536 NRDCO43847 1150 aa19.21■□□□□ 0.67
PCDH1-203ENST00000394536 TTC5Q8N0Z6 440 aa19.21■□□□□ 0.67
PCDH1-203ENST00000394536 FMNL2Q96PY5 1086 aa19.21■□□□□ 0.67
PCDH1-203ENST00000394536 MAP3K2Q9Y2U5 619 aa19.21■□□□□ 0.67
PCDH1-203ENST00000394536 BRD1O95696 1058 aa19.21■□□□□ 0.67
PCDH1-203ENST00000394536 METP08581 1390 aa19.21■□□□□ 0.67
PCDH1-203ENST00000394536 HMGN5P82970 282 aaKnown RBP19.21■□□□□ 0.67
PCDH1-203ENST00000394536 UBE2HP62256 183 aa19.21■□□□□ 0.67
PCDH1-203ENST00000394536 USP44Q9H0E7 712 aa19.2■□□□□ 0.66
PCDH1-203ENST00000394536 SOS1Q07889 1333 aaPredicted RBP19.2■□□□□ 0.66
PCDH1-203ENST00000394536 ERC1Q8IUD2 1116 aa19.2■□□□□ 0.66
PCDH1-203ENST00000394536 NPHP1O15259 732 aa19.2■□□□□ 0.66
PCDH1-203ENST00000394536 RAPGEF4Q8WZA2 1011 aa19.2■□□□□ 0.66
PCDH1-203ENST00000394536 TSC1Q92574 1164 aa19.2■□□□□ 0.66
PCDH1-203ENST00000394536 INTS4Q96HW7 963 aaKnown RBP19.2■□□□□ 0.66
PCDH1-203ENST00000394536 TAF7LQ5H9L4 462 aa19.19■□□□□ 0.66
PCDH1-203ENST00000394536 CWF19L2Q2TBE0 894 aaKnown RBP19.19■□□□□ 0.66
PCDH1-203ENST00000394536 ZSCAN31Q96LW9 406 aaPredicted RBP19.19■□□□□ 0.66
PCDH1-203ENST00000394536 PNPLA6Q8IY17 1366 aa19.19■□□□□ 0.66
PCDH1-203ENST00000394536 MAP3K11Q16584 847 aa19.19■□□□□ 0.66
PCDH1-203ENST00000394536 SDF4Q9BRK5 362 aa19.19■□□□□ 0.66
PCDH1-203ENST00000394536 ZDHHC9Q9Y397 364 aa19.18■□□□□ 0.66
PCDH1-203ENST00000394536 QRICH2Q9H0J4 1663 aa19.18■□□□□ 0.66
PCDH1-203ENST00000394536 PRR36Q9H6K5 1346 aa19.18■□□□□ 0.66
PCDH1-203ENST00000394536 NOLC1Q14978 699 aaKnown RBP eCLIP19.18■□□□□ 0.66
PCDH1-203ENST00000394536 KIF3AQ9Y496 699 aa19.18■□□□□ 0.66
PCDH1-203ENST00000394536 CEP152O94986 1710 aa19.18■□□□□ 0.66
PCDH1-203ENST00000394536 PTCH1Q13635 1447 aa19.17■□□□□ 0.66
PCDH1-203ENST00000394536 F13A1P00488 732 aa19.17■□□□□ 0.66
PCDH1-203ENST00000394536 ZC3H6P61129 1189 aaKnown RBP19.17■□□□□ 0.66
PCDH1-203ENST00000394536 TPD52L1Q16890 204 aaPredicted RBP19.17■□□□□ 0.66
PCDH1-203ENST00000394536 CCDC73Q6ZRK6 1079 aa19.17■□□□□ 0.66
PCDH1-203ENST00000394536 LRRC59Q96AG4 307 aaKnown RBP19.17■□□□□ 0.66
PCDH1-203ENST00000394536 GLI2P10070 1586 aa19.17■□□□□ 0.66
PCDH1-203ENST00000394536 DDIT3P35638 169 aa19.17■□□□□ 0.66
PCDH1-203ENST00000394536 CBX1P83916 185 aa19.17■□□□□ 0.66
PCDH1-203ENST00000394536 HS1BP3Q53T59 392 aa19.17■□□□□ 0.66
PCDH1-203ENST00000394536 MCM5P33992 734 aa19.17■□□□□ 0.66
PCDH1-203ENST00000394536 FILIP1Q7Z7B0 1213 aa19.17■□□□□ 0.66
PCDH1-203ENST00000394536 LGR6Q9HBX8 967 aa19.17■□□□□ 0.66
PCDH1-203ENST00000394536 SNX14Q9Y5W7 946 aa19.17■□□□□ 0.66
PCDH1-203ENST00000394536 DBF4Q9UBU7 674 aaPredicted RBP19.16■□□□□ 0.66
PCDH1-203ENST00000394536 MTERF4Q7Z6M4 381 aaKnown RBP19.16■□□□□ 0.66
PCDH1-203ENST00000394536 IL17REQ8NFR9 667 aa19.16■□□□□ 0.66
PCDH1-203ENST00000394536 LRRC2Q9BYS8 371 aa19.16■□□□□ 0.66
PCDH1-203ENST00000394536 ABCC3O15438 1527 aa19.16■□□□□ 0.66
PCDH1-203ENST00000394536 RBM8AQ9Y5S9 174 aaKnown RBP19.16■□□□□ 0.66
PCDH1-203ENST00000394536 ADGRB3O60242 1522 aa19.15■□□□□ 0.66
PCDH1-203ENST00000394536 PIP4K2AP48426 406 aaPredicted RBP19.15■□□□□ 0.66
PCDH1-203ENST00000394536 PODXL2Q9NZ53 605 aa19.15■□□□□ 0.66
PCDH1-203ENST00000394536 GUCY1B3Q02153 619 aa19.15■□□□□ 0.66
PCDH1-203ENST00000394536 MLH3Q9UHC1 1453 aa19.15■□□□□ 0.66
PCDH1-203ENST00000394536 FLT4P35916 1363 aa19.15■□□□□ 0.66
PCDH1-203ENST00000394536 HIP1O00291 1037 aa19.15■□□□□ 0.66
PCDH1-203ENST00000394536 PPP6R1Q9UPN7 881 aa19.15■□□□□ 0.66
PCDH1-203ENST00000394536 SGSM2O43147 1006 aa19.14■□□□□ 0.66
PCDH1-203ENST00000394536 RASEFQ8IZ41 740 aa19.14■□□□□ 0.66
PCDH1-203ENST00000394536 THEMISQ8N1K5 641 aaPredicted RBP19.14■□□□□ 0.66
PCDH1-203ENST00000394536 SH2B1Q9NRF2 756 aaPredicted RBP19.14■□□□□ 0.65
PCDH1-203ENST00000394536 PPRC1Q5VV67 1664 aaKnown RBP19.14■□□□□ 0.65
PCDH1-203ENST00000394536 LRRC7Q96NW7 1537 aa19.13■□□□□ 0.65
PCDH1-203ENST00000394536 CPLX1O14810 134 aa19.13■□□□□ 0.65
PCDH1-203ENST00000394536 WASHC4Q2M389 1173 aa19.13■□□□□ 0.65
PCDH1-203ENST00000394536 KIAA0232Q92628 1395 aa19.13■□□□□ 0.65
PCDH1-203ENST00000394536 KCNQ3O43525 872 aa19.13■□□□□ 0.65
PCDH1-203ENST00000394536 C16orf45Q96MC5 204 aaPredicted RBP19.13■□□□□ 0.65
PCDH1-203ENST00000394536 KLHDC4Q8TBB5 520 aa19.13■□□□□ 0.65
PCDH1-203ENST00000394536 TOMM22Q9NS69 142 aa19.13■□□□□ 0.65
PCDH1-203ENST00000394536 ME1P48163 572 aa19.12■□□□□ 0.65
PCDH1-203ENST00000394536 ANKRD1Q15327 319 aa19.12■□□□□ 0.65
PCDH1-203ENST00000394536 KINO60870 393 aaKnown RBP19.12■□□□□ 0.65
PCDH1-203ENST00000394536 HSPA4P34932 840 aa19.12■□□□□ 0.65
PCDH1-203ENST00000394536 EVI5LQ96CN4 794 aa19.12■□□□□ 0.65
PCDH1-203ENST00000394536 DACT1Q9NYF0 836 aa19.12■□□□□ 0.65
PCDH1-203ENST00000394536 PHF8Q9UPP1 1060 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms