RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 LTN1O94822 1766 aa13.71□□□□□ -0.21
TCOF1-203ENST00000394269 ZNF142P52746 1687 aaPredicted RBP13.71□□□□□ -0.21
TCOF1-203ENST00000394269 BEND3Q5T5X7 828 aa13.71□□□□□ -0.21
TCOF1-203ENST00000394269 ADAMTS2O95450 1211 aa13.71□□□□□ -0.22
TCOF1-203ENST00000394269 COPS6Q7L5N1 327 aa13.71□□□□□ -0.22
TCOF1-203ENST00000394269 PA2G4Q9UQ80 394 aaKnown RBP13.71□□□□□ -0.22
TCOF1-203ENST00000394269 SIL1Q9H173 461 aa13.7□□□□□ -0.22
TCOF1-203ENST00000394269 MX1P20591 662 aa13.7□□□□□ -0.22
TCOF1-203ENST00000394269 XAGE3Q8WTP9 111 aa13.7□□□□□ -0.22
TCOF1-203ENST00000394269 CHMP4AQ9BY43 222 aa13.7□□□□□ -0.22
TCOF1-203ENST00000394269 KSR2Q6VAB6 950 aa13.69□□□□□ -0.22
TCOF1-203ENST00000394269 ATP5J2-PTCD1G3V325 749 aa13.69□□□□□ -0.22
TCOF1-203ENST00000394269 DDX58O95786 925 aaKnown RBP13.69□□□□□ -0.22
TCOF1-203ENST00000394269 CD2BP2O95400 341 aaKnown RBP13.68□□□□□ -0.22
TCOF1-203ENST00000394269 MYD88Q99836 296 aa13.68□□□□□ -0.22
TCOF1-203ENST00000394269 HOXB7P09629 217 aa13.68□□□□□ -0.22
TCOF1-203ENST00000394269 LARP1Q6PKG0 1096 aaKnown RBP13.68□□□□□ -0.22
TCOF1-203ENST00000394269 NOL8Q76FK4 1167 aaKnown RBP13.68□□□□□ -0.22
TCOF1-203ENST00000394269 HYPKQ9NX55 129 aa13.68□□□□□ -0.22
TCOF1-203ENST00000394269 RGPD2P0DJD1 1756 aa13.68□□□□□ -0.22
TCOF1-203ENST00000394269 KLHDC4Q8TBB5 520 aa13.67□□□□□ -0.22
TCOF1-203ENST00000394269 ZCRB1Q8TBF4 217 aaKnown RBP13.67□□□□□ -0.22
TCOF1-203ENST00000394269 DCAF5Q96JK2 942 aa13.67□□□□□ -0.22
TCOF1-203ENST00000394269 SOS1Q07889 1333 aaPredicted RBP13.67□□□□□ -0.22
TCOF1-203ENST00000394269 RBM25P49756 843 aaKnown RBP13.67□□□□□ -0.22
TCOF1-203ENST00000394269 NEXNQ0ZGT2 675 aa13.67□□□□□ -0.22
TCOF1-203ENST00000394269 RHPN1Q8TCX5 695 aa13.67□□□□□ -0.22
TCOF1-203ENST00000394269 ANO2Q9NQ90 1003 aa13.67□□□□□ -0.22
TCOF1-203ENST00000394269 DDX21Q9NR30 783 aaKnown RBP eCLIP13.67□□□□□ -0.22
TCOF1-203ENST00000394269 MARF1Q9Y4F3 1742 aaKnown RBP13.67□□□□□ -0.22
TCOF1-203ENST00000394269 ADCY9O60503 1353 aa13.66□□□□□ -0.22
TCOF1-203ENST00000394269 UNC5CLQ8IV45 518 aa13.66□□□□□ -0.22
TCOF1-203ENST00000394269 SYTL4Q96C24 671 aaPredicted RBP13.66□□□□□ -0.22
TCOF1-203ENST00000394269 CHMP3Q9Y3E7 222 aa13.66□□□□□ -0.22
TCOF1-203ENST00000394269 TNS3Q68CZ2 1445 aa13.66□□□□□ -0.22
TCOF1-203ENST00000394269 SNRPA1P09661 255 aaKnown RBP13.65□□□□□ -0.22
TCOF1-203ENST00000394269 SSH3Q8TE77 659 aa13.65□□□□□ -0.22
TCOF1-203ENST00000394269 FMNL2Q96PY5 1086 aa13.65□□□□□ -0.22
TCOF1-203ENST00000394269 GZF1Q9H116 711 aaPredicted RBP13.65□□□□□ -0.22
TCOF1-203ENST00000394269 MEGF6O75095 1541 aa13.65□□□□□ -0.22
TCOF1-203ENST00000394269 KIF2CQ99661 725 aa13.65□□□□□ -0.22
TCOF1-203ENST00000394269 KAT6BQ8WYB5 2073 aa13.64□□□□□ -0.23
TCOF1-203ENST00000394269 ANKRD13DQ6ZTN6 518 aa13.64□□□□□ -0.23
TCOF1-203ENST00000394269 USP26Q9BXU7 913 aa13.64□□□□□ -0.23
TCOF1-203ENST00000394269 BICC1Q9H694 974 aaKnown RBP13.64□□□□□ -0.23
TCOF1-203ENST00000394269 GRM8O00222 908 aa13.64□□□□□ -0.23
TCOF1-203ENST00000394269 ERC2O15083 957 aa13.64□□□□□ -0.23
TCOF1-203ENST00000394269 PDIA6Q15084 440 aa13.64□□□□□ -0.23
TCOF1-203ENST00000394269 SUCLG2Q96I99 432 aa13.64□□□□□ -0.23
TCOF1-203ENST00000394269 BTG4Q9NY30 223 aa13.64□□□□□ -0.23
TCOF1-203ENST00000394269 MED1Q15648 1581 aaPredicted RBP13.63□□□□□ -0.23
TCOF1-203ENST00000394269 GOLGB1Q14789 3259 aaKnown RBP13.63□□□□□ -0.23
TCOF1-203ENST00000394269 REC8O95072 547 aa13.63□□□□□ -0.23
TCOF1-203ENST00000394269 A1BGP04217 495 aa13.63□□□□□ -0.23
TCOF1-203ENST00000394269 LINS1Q8NG48 757 aa13.63□□□□□ -0.23
TCOF1-203ENST00000394269 IBTKQ9P2D0 1353 aaPredicted RBP13.63□□□□□ -0.23
TCOF1-203ENST00000394269 KIF1BPQ96EK5 621 aa13.63□□□□□ -0.23
TCOF1-203ENST00000394269 ANTXR1Q9H6X2 564 aa13.63□□□□□ -0.23
TCOF1-203ENST00000394269 IL2RBP14784 551 aa13.62□□□□□ -0.23
TCOF1-203ENST00000394269 CLASRPQ8N2M8 674 aaKnown RBP13.62□□□□□ -0.23
TCOF1-203ENST00000394269 CCDC8Q9H0W5 538 aaPredicted RBP13.62□□□□□ -0.23
TCOF1-203ENST00000394269 IFIT2P09913 472 aaKnown RBP13.62□□□□□ -0.23
TCOF1-203ENST00000394269 UBE3BQ7Z3V4 1068 aa13.62□□□□□ -0.23
TCOF1-203ENST00000394269 ZBTB3Q9H5J0 574 aa13.62□□□□□ -0.23
TCOF1-203ENST00000394269 IGKV5-2P06315 115 aa13.62□□□□□ -0.23
TCOF1-203ENST00000394269 G3BP1Q13283 466 aaKnown RBP eCLIP13.62□□□□□ -0.232e-7■■■■□ 24.7
TCOF1-203ENST00000394269 SLIT3O75094 1523 aa13.62□□□□□ -0.23
TCOF1-203ENST00000394269 KDM6AO15550 1401 aaPredicted RBP13.62□□□□□ -0.23
TCOF1-203ENST00000394269 CHMP5Q9NZZ3 219 aa13.61□□□□□ -0.23
TCOF1-203ENST00000394269 WDR17Q8IZU2 1322 aa13.61□□□□□ -0.23
TCOF1-203ENST00000394269 AACSQ86V21 672 aa13.61□□□□□ -0.23
TCOF1-203ENST00000394269 GSE1Q14687 1217 aa13.61□□□□□ -0.23
TCOF1-203ENST00000394269 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.61□□□□□ -0.23
TCOF1-203ENST00000394269 ALDH1L1O75891 902 aa13.6□□□□□ -0.23
TCOF1-203ENST00000394269 CWC27Q6UX04 472 aaKnown RBP13.6□□□□□ -0.23
TCOF1-203ENST00000394269 A0A087WZG4 1122 aa13.6□□□□□ -0.23
TCOF1-203ENST00000394269 K7ELQ4 463 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-203ENST00000394269 RAB11FIP3O75154 756 aa13.6□□□□□ -0.23
TCOF1-203ENST00000394269 NEK4P51957 841 aa13.6□□□□□ -0.23
TCOF1-203ENST00000394269 FOXD4L5Q5VV16 416 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-203ENST00000394269 FOXD4L4Q8WXT5 416 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-203ENST00000394269 CCDC85AQ96PX6 553 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-203ENST00000394269 RTN4Q9NQC3 1192 aaKnown RBP13.6□□□□□ -0.23
TCOF1-203ENST00000394269 POLA2Q14181 598 aa13.59□□□□□ -0.23
TCOF1-203ENST00000394269 RGPD5Q99666 1765 aa13.59□□□□□ -0.23
TCOF1-203ENST00000394269 NEURL1BA8MQ27 555 aa13.59□□□□□ -0.23
TCOF1-203ENST00000394269 CHMLP26374 656 aa13.59□□□□□ -0.23
TCOF1-203ENST00000394269 HSP90AB4PQ58FF6 505 aa13.59□□□□□ -0.23
TCOF1-203ENST00000394269 EPHA10Q5JZY3 1008 aa13.59□□□□□ -0.23
TCOF1-203ENST00000394269 TTLL7Q6ZT98 887 aa13.59□□□□□ -0.23
TCOF1-203ENST00000394269 UPF3BQ9BZI7 483 aaKnown RBP13.59□□□□□ -0.23
TCOF1-203ENST00000394269 SOS2Q07890 1332 aaPredicted RBP13.59□□□□□ -0.23
TCOF1-203ENST00000394269 GCKRQ14397 625 aa13.58□□□□□ -0.23
TCOF1-203ENST00000394269 ESYT1Q9BSJ8 1104 aa13.58□□□□□ -0.23
TCOF1-203ENST00000394269 OSBPL3Q9H4L5 887 aa13.58□□□□□ -0.23
TCOF1-203ENST00000394269 STRCP1A6NGW2 1772 aa13.58□□□□□ -0.24
TCOF1-203ENST00000394269 KAZALD1Q96I82 304 aa13.58□□□□□ -0.24
TCOF1-203ENST00000394269 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.58□□□□□ -0.24
TCOF1-203ENST00000394269 PCDH11XQ9BZA7 1347 aa13.58□□□□□ -0.24
TCOF1-203ENST00000394269 PCDH11YQ9BZA8 1340 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms