RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 CCDC8Q9H0W5 538 aaPredicted RBP11.5□□□□□ -0.57
COL4A6-202ENST00000372216 KIAA0556O60303 1618 aa11.49□□□□□ -0.57
COL4A6-202ENST00000372216 RPRD2Q5VT52 1461 aaKnown RBP11.49□□□□□ -0.57
COL4A6-202ENST00000372216 ANKRD36BQ8N2N9 1353 aa11.49□□□□□ -0.57
COL4A6-202ENST00000372216 UGGT2Q9NYU1 1516 aa11.49□□□□□ -0.57
COL4A6-202ENST00000372216 RARSP54136 660 aaKnown RBP11.49□□□□□ -0.57
COL4A6-202ENST00000372216 WASF1Q92558 559 aa11.49□□□□□ -0.57
COL4A6-202ENST00000372216 ZSCAN31Q96LW9 406 aaPredicted RBP11.49□□□□□ -0.57
COL4A6-202ENST00000372216 TRIM5Q9C035 493 aa11.49□□□□□ -0.57
COL4A6-202ENST00000372216 MAP3K12Q12852 859 aa11.49□□□□□ -0.57
COL4A6-202ENST00000372216 NFKBIBQ15653 356 aa11.49□□□□□ -0.57
COL4A6-202ENST00000372216 NOM1Q5C9Z4 860 aaKnown RBP11.49□□□□□ -0.57
COL4A6-202ENST00000372216 ZNF622Q969S3 477 aaKnown RBP eCLIP11.49□□□□□ -0.57
COL4A6-202ENST00000372216 C6orf229H3BNL8 230 aa11.49□□□□□ -0.57
COL4A6-202ENST00000372216 MBD3O95983 291 aa11.49□□□□□ -0.57
COL4A6-202ENST00000372216 AXDND1Q5T1B0 1012 aaPredicted RBP11.49□□□□□ -0.57
COL4A6-202ENST00000372216 NPHP3Q7Z494 1330 aa11.49□□□□□ -0.57
COL4A6-202ENST00000372216 GLRX3O76003 335 aaKnown RBP11.49□□□□□ -0.57
COL4A6-202ENST00000372216 PIP4K2AP48426 406 aaPredicted RBP11.49□□□□□ -0.57
COL4A6-202ENST00000372216 ST5P78524 1137 aa11.49□□□□□ -0.57
COL4A6-202ENST00000372216 CCDC181Q5TID7 509 aa11.49□□□□□ -0.57
COL4A6-202ENST00000372216 SMARCE1Q969G3 411 aa11.49□□□□□ -0.57
COL4A6-202ENST00000372216 CWC25Q9NXE8 425 aaPredicted RBP11.49□□□□□ -0.57
COL4A6-202ENST00000372216 NUP153P49790 1475 aaKnown RBP11.49□□□□□ -0.57
COL4A6-202ENST00000372216 WDR33Q9C0J8 1336 aaKnown RBP11.49□□□□□ -0.57
COL4A6-202ENST00000372216 FAM83GA6ND36 823 aa11.48□□□□□ -0.57
COL4A6-202ENST00000372216 DRC1Q96MC2 740 aa11.48□□□□□ -0.57
COL4A6-202ENST00000372216 SEC63Q9UGP8 760 aaKnown RBP11.48□□□□□ -0.57
COL4A6-202ENST00000372216 H0YHG0 523 aa11.48□□□□□ -0.57
COL4A6-202ENST00000372216 SERPINC1P01008 464 aa11.48□□□□□ -0.57
COL4A6-202ENST00000372216 ZCRB1Q8TBF4 217 aaKnown RBP11.48□□□□□ -0.57
COL4A6-202ENST00000372216 MYO6Q9UM54 1294 aa11.48□□□□□ -0.57
COL4A6-202ENST00000372216 TTC21AQ8NDW8 1320 aa11.48□□□□□ -0.57
COL4A6-202ENST00000372216 ATP5J2-PTCD1G3V325 749 aa11.48□□□□□ -0.57
COL4A6-202ENST00000372216 STIM1Q13586 685 aa11.48□□□□□ -0.57
COL4A6-202ENST00000372216 PPP1R42Q7Z4L9 355 aa11.48□□□□□ -0.57
COL4A6-202ENST00000372216 DDX46Q7L014 1031 aaKnown RBP11.48□□□□□ -0.57
COL4A6-202ENST00000372216 FBLN1P23142 703 aa11.48□□□□□ -0.57
COL4A6-202ENST00000372216 FLIIQ13045 1269 aa11.48□□□□□ -0.57
COL4A6-202ENST00000372216 NAPBQ9H115 298 aa11.48□□□□□ -0.57
COL4A6-202ENST00000372216 TRAK2O60296 914 aa11.47□□□□□ -0.57
COL4A6-202ENST00000372216 HSP90B2PQ58FF3 399 aa11.47□□□□□ -0.57
COL4A6-202ENST00000372216 PTPRCP08575 1304 aa11.47□□□□□ -0.57
COL4A6-202ENST00000372216 TNNT1P13805 278 aa11.47□□□□□ -0.57
COL4A6-202ENST00000372216 NASPP49321 788 aaPredicted RBP11.47□□□□□ -0.57
COL4A6-202ENST00000372216 SLF2Q8IX21 1173 aa11.47□□□□□ -0.57
COL4A6-202ENST00000372216 PRPF40BQ6NWY9 871 aaKnown RBP11.47□□□□□ -0.57
COL4A6-202ENST00000372216 DACH1Q9UI36 760 aa11.47□□□□□ -0.57
COL4A6-202ENST00000372216 U3KPZ7 1027 aaPredicted RBP11.47□□□□□ -0.57
COL4A6-202ENST00000372216 SNRPA1P09661 255 aaKnown RBP11.47□□□□□ -0.57
COL4A6-202ENST00000372216 CCDC39Q9UFE4 941 aa11.47□□□□□ -0.57
COL4A6-202ENST00000372216 ATP6V1AP38606 617 aa11.47□□□□□ -0.57
COL4A6-202ENST00000372216 TAF3Q5VWG9 929 aa11.47□□□□□ -0.57
COL4A6-202ENST00000372216 TRAPPC8Q9Y2L5 1435 aa11.47□□□□□ -0.57
COL4A6-202ENST00000372216 CDC5LQ99459 802 aaKnown RBP11.46□□□□□ -0.57
COL4A6-202ENST00000372216 KRT85P78386 507 aa11.46□□□□□ -0.57
COL4A6-202ENST00000372216 CCDC96Q2M329 555 aa11.46□□□□□ -0.57
COL4A6-202ENST00000372216 DDX11Q96FC9 970 aa11.46□□□□□ -0.57
COL4A6-202ENST00000372216 TNMDQ9H2S6 317 aa11.46□□□□□ -0.57
COL4A6-202ENST00000372216 MBIPQ9NS73 344 aa11.46□□□□□ -0.57
COL4A6-202ENST00000372216 TSPYL1Q9H0U9 437 aa11.46□□□□□ -0.57
COL4A6-202ENST00000372216 HSPA2P54652 639 aa11.46□□□□□ -0.58
COL4A6-202ENST00000372216 C16orf71Q8IYS4 520 aaPredicted RBP11.46□□□□□ -0.58
COL4A6-202ENST00000372216 ZNF444Q8N0Y2 327 aaPredicted RBP11.46□□□□□ -0.58
COL4A6-202ENST00000372216 EIF4G3O43432 1585 aaKnown RBP11.45□□□□□ -0.58
COL4A6-202ENST00000372216 RANBP6O60518 1105 aaKnown RBP11.45□□□□□ -0.58
COL4A6-202ENST00000372216 SPATA32Q96LK8 384 aa11.45□□□□□ -0.58
COL4A6-202ENST00000372216 WDHD1O75717 1129 aaPredicted RBP11.45□□□□□ -0.58
COL4A6-202ENST00000372216 NBPF6Q5VWK0 638 aa11.45□□□□□ -0.58
COL4A6-202ENST00000372216 NBPF5PQ86XG9 351 aaPredicted RBP11.45□□□□□ -0.58
COL4A6-202ENST00000372216 JARID2Q92833 1246 aaPredicted RBP11.45□□□□□ -0.58
COL4A6-202ENST00000372216 NBPF4Q96M43 638 aa11.45□□□□□ -0.58
COL4A6-202ENST00000372216 PIK3R4Q99570 1358 aa11.45□□□□□ -0.58
COL4A6-202ENST00000372216 CABLES1Q8TDN4 633 aa11.45□□□□□ -0.58
COL4A6-202ENST00000372216 BMP2KQ9NSY1 1161 aaPredicted RBP11.45□□□□□ -0.58
COL4A6-202ENST00000372216 DNA2P51530 1060 aa11.44□□□□□ -0.58
COL4A6-202ENST00000372216 ZRSR2Q15696 482 aaKnown RBP11.44□□□□□ -0.58
COL4A6-202ENST00000372216 CCDC82Q8N4S0 544 aa11.44□□□□□ -0.58
COL4A6-202ENST00000372216 ACBD3Q9H3P7 528 aa11.44□□□□□ -0.58
COL4A6-202ENST00000372216 CEP57L1Q8IYX8 460 aa11.44□□□□□ -0.58
COL4A6-202ENST00000372216 CCDC191Q8NCU4 936 aa11.44□□□□□ -0.58
COL4A6-202ENST00000372216 ARGLU1Q9NWB6 273 aaPredicted RBP11.44□□□□□ -0.58
COL4A6-202ENST00000372216 TNIP1Q15025 636 aa11.44□□□□□ -0.58
COL4A6-202ENST00000372216 TMX1Q9H3N1 280 aa11.44□□□□□ -0.58
COL4A6-202ENST00000372216 COMMD10Q9Y6G5 202 aa11.44□□□□□ -0.58
COL4A6-202ENST00000372216 HMGN5P82970 282 aaKnown RBP11.44□□□□□ -0.58
COL4A6-202ENST00000372216 ABCC10Q5T3U5 1492 aa11.44□□□□□ -0.58
COL4A6-202ENST00000372216 LDHAL6AQ6ZMR3 332 aa11.43□□□□□ -0.58
COL4A6-202ENST00000372216 CEP131Q9UPN4 1083 aa11.43□□□□□ -0.58
COL4A6-202ENST00000372216 ANAPC15P60006 121 aa11.43□□□□□ -0.58
COL4A6-202ENST00000372216 PUS7Q96PZ0 661 aaKnown RBP11.43□□□□□ -0.58
COL4A6-202ENST00000372216 ZNHIT6Q9NWK9 470 aaKnown RBP11.43□□□□□ -0.58
COL4A6-202ENST00000372216 ZNF213O14771 459 aa11.43□□□□□ -0.58
COL4A6-202ENST00000372216 CFAP45Q9UL16 551 aa11.43□□□□□ -0.58
COL4A6-202ENST00000372216 DDB1Q16531 1140 aa11.43□□□□□ -0.58
COL4A6-202ENST00000372216 UBE3BQ7Z3V4 1068 aa11.43□□□□□ -0.58
COL4A6-202ENST00000372216 CCDC192P0DO97 292 aa11.43□□□□□ -0.58
COL4A6-202ENST00000372216 GBP2P32456 591 aaPredicted RBP11.43□□□□□ -0.58
COL4A6-202ENST00000372216 CCDC152Q4G0S7 254 aa11.43□□□□□ -0.58
COL4A6-202ENST00000372216 LMTK3Q96Q04 1460 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms