RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 BICDL1Q6ZP65 573 aa11.75□□□□□ -0.53
USP4-202ENST00000351842 TRMT2AQ8IZ69 625 aaKnown RBP11.75□□□□□ -0.53
USP4-202ENST00000351842 BCL11BQ9C0K0 894 aaPredicted RBP11.75□□□□□ -0.53
USP4-202ENST00000351842 ZBTB1Q9Y2K1 713 aa11.75□□□□□ -0.53
USP4-202ENST00000351842 RLBP1P12271 317 aa11.74□□□□□ -0.53
USP4-202ENST00000351842 ITPK1Q13572 414 aa11.74□□□□□ -0.53
USP4-202ENST00000351842 EXOC6Q8TAG9 804 aa11.74□□□□□ -0.53
USP4-202ENST00000351842 C1orf115Q9H7X2 142 aa11.74□□□□□ -0.53
USP4-202ENST00000351842 ATP5J2-PTCD1G3V325 749 aa11.74□□□□□ -0.53
USP4-202ENST00000351842 COPS6Q7L5N1 327 aa11.74□□□□□ -0.53
USP4-202ENST00000351842 CRBNQ96SW2 442 aa11.74□□□□□ -0.53
USP4-202ENST00000351842 PARP4Q9UKK3 1724 aaKnown RBP11.74□□□□□ -0.53
USP4-202ENST00000351842 XAGE3Q8WTP9 111 aa11.73□□□□□ -0.53
USP4-202ENST00000351842 ABCC6O95255 1503 aa11.73□□□□□ -0.53
USP4-202ENST00000351842 GNPATO15228 680 aa11.73□□□□□ -0.53
USP4-202ENST00000351842 GPTP24298 496 aa11.73□□□□□ -0.53
USP4-202ENST00000351842 PI4KAP2A4QPH2 592 aa11.73□□□□□ -0.53
USP4-202ENST00000351842 ONECUT3O60422 494 aaPredicted RBP11.73□□□□□ -0.53
USP4-202ENST00000351842 STARD3NLO95772 234 aa11.73□□□□□ -0.53
USP4-202ENST00000351842 TRIM27P14373 513 aa11.73□□□□□ -0.53
USP4-202ENST00000351842 FLIIQ13045 1269 aa11.73□□□□□ -0.53
USP4-202ENST00000351842 TTLL7Q6ZT98 887 aa11.73□□□□□ -0.53
USP4-202ENST00000351842 RIC3Q7Z5B4 369 aa11.73□□□□□ -0.53
USP4-202ENST00000351842 PI4KAP1Q8N8J0 262 aa11.73□□□□□ -0.53
USP4-202ENST00000351842 BCL9O00512 1426 aa11.72□□□□□ -0.53
USP4-202ENST00000351842 ZKSCAN2Q63HK3 967 aa11.72□□□□□ -0.53
USP4-202ENST00000351842 CCDC24Q8N4L8 307 aa11.72□□□□□ -0.53
USP4-202ENST00000351842 LRRC37A3O60309 1634 aa11.72□□□□□ -0.53
USP4-202ENST00000351842 EZH2Q15910 746 aaKnown RBP11.71□□□□□ -0.53
USP4-202ENST00000351842 B4GALNT3Q6L9W6 998 aa11.71□□□□□ -0.53
USP4-202ENST00000351842 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.71□□□□□ -0.53
USP4-202ENST00000351842 NBPF26B4DH59 902 aa11.71□□□□□ -0.53
USP4-202ENST00000351842 CRKLP46109 303 aaKnown RBP11.71□□□□□ -0.53
USP4-202ENST00000351842 NBPF14Q5TI25 921 aa11.71□□□□□ -0.53
USP4-202ENST00000351842 NBPF10Q6P3W6 841 aaKnown RBP11.71□□□□□ -0.53
USP4-202ENST00000351842 NBPF15Q8N660 670 aa11.71□□□□□ -0.53
USP4-202ENST00000351842 LRRC4BQ9NT99 713 aa11.71□□□□□ -0.53
USP4-202ENST00000351842 HEG1Q9ULI3 1381 aa11.71□□□□□ -0.54
USP4-202ENST00000351842 NPHP1O15259 732 aa11.71□□□□□ -0.54
USP4-202ENST00000351842 MRPL50Q8N5N7 158 aaKnown RBP11.71□□□□□ -0.54
USP4-202ENST00000351842 DBF4Q9UBU7 674 aaPredicted RBP11.71□□□□□ -0.54
USP4-202ENST00000351842 TMEM57Q8N5G2 664 aa11.7□□□□□ -0.54
USP4-202ENST00000351842 LINC00116Q8NCU8 138 aa11.7□□□□□ -0.54
USP4-202ENST00000351842 CCDC85AQ96PX6 553 aaPredicted RBP11.7□□□□□ -0.54
USP4-202ENST00000351842 WWC3Q9ULE0 1092 aa11.7□□□□□ -0.54
USP4-202ENST00000351842 APBB1O00213 710 aa11.7□□□□□ -0.54
USP4-202ENST00000351842 CWF19L2Q2TBE0 894 aaKnown RBP11.7□□□□□ -0.54
USP4-202ENST00000351842 TXNRD1Q16881 649 aa11.69□□□□□ -0.54
USP4-202ENST00000351842 DOT1LQ8TEK3 1739 aa11.69□□□□□ -0.54
USP4-202ENST00000351842 AK7Q96M32 723 aa11.69□□□□□ -0.54
USP4-202ENST00000351842 TFCP2L1Q9NZI6 479 aa11.69□□□□□ -0.54
USP4-202ENST00000351842 MAP3K2Q9Y2U5 619 aa11.69□□□□□ -0.54
USP4-202ENST00000351842 BRWD3Q6RI45 1802 aa11.69□□□□□ -0.54
USP4-202ENST00000351842 ATF7IPQ6VMQ6 1270 aa11.69□□□□□ -0.54
USP4-202ENST00000351842 AMIGO3Q86WK7 504 aa11.69□□□□□ -0.54
USP4-202ENST00000351842 DZIP1LQ8IYY4 767 aaKnown RBP11.69□□□□□ -0.54
USP4-202ENST00000351842 MSL1Q68DK7 614 aa11.69□□□□□ -0.54
USP4-202ENST00000351842 ILDR2Q71H61 639 aa11.69□□□□□ -0.54
USP4-202ENST00000351842 SMARCC1Q92922 1105 aaPredicted RBP11.69□□□□□ -0.54
USP4-202ENST00000351842 MYD88Q99836 296 aa11.68□□□□□ -0.54
USP4-202ENST00000351842 SRP68Q9UHB9 627 aaKnown RBP11.68□□□□□ -0.54
USP4-202ENST00000351842 IPO8O15397 1037 aaKnown RBP11.68□□□□□ -0.54
USP4-202ENST00000351842 PKD1L3Q7Z443 1732 aa11.67□□□□□ -0.54
USP4-202ENST00000351842 SHANK3Q9BYB0 1731 aa11.67□□□□□ -0.54
USP4-202ENST00000351842 TOGARAM1Q9Y4F4 1720 aa11.67□□□□□ -0.54
USP4-202ENST00000351842 CYP19A1P11511 503 aaPredicted RBP11.67□□□□□ -0.54
USP4-202ENST00000351842 SCN11AQ9UI33 1791 aa11.67□□□□□ -0.54
USP4-202ENST00000351842 KIF16BQ96L93 1317 aa11.67□□□□□ -0.54
USP4-202ENST00000351842 VIRMAQ69YN4 1812 aaKnown RBP11.67□□□□□ -0.54
USP4-202ENST00000351842 DDX21Q9NR30 783 aaKnown RBP eCLIP11.67□□□□□ -0.54
USP4-202ENST00000351842 CCDC87Q9NVE4 849 aa11.67□□□□□ -0.54
USP4-202ENST00000351842 DZIP3Q86Y13 1208 aaKnown RBP11.66□□□□□ -0.54
USP4-202ENST00000351842 KLHL34Q8N239 644 aa11.66□□□□□ -0.54
USP4-202ENST00000351842 PROM2Q8N271 834 aa11.66□□□□□ -0.54
USP4-202ENST00000351842 CHMP3Q9Y3E7 222 aa11.66□□□□□ -0.54
USP4-202ENST00000351842 PDIA6Q15084 440 aa11.66□□□□□ -0.54
USP4-202ENST00000351842 ANKRD13DQ6ZTN6 518 aa11.66□□□□□ -0.54
USP4-202ENST00000351842 ITGB4P16144 1822 aa11.66□□□□□ -0.54
USP4-202ENST00000351842 PSDA5PKW4 1024 aaPredicted RBP11.65□□□□□ -0.54
USP4-202ENST00000351842 HLFQ16534 295 aa11.65□□□□□ -0.54
USP4-202ENST00000351842 KIF6Q6ZMV9 814 aa11.65□□□□□ -0.54
USP4-202ENST00000351842 SKAP1Q86WV1 359 aa11.65□□□□□ -0.54
USP4-202ENST00000351842 PDGFDQ9GZP0 370 aaPredicted RBP11.65□□□□□ -0.54
USP4-202ENST00000351842 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.65□□□□□ -0.54
USP4-202ENST00000351842 C9orf78Q9NZ63 289 aaPredicted RBP11.65□□□□□ -0.54
USP4-202ENST00000351842 PPP1R1BQ9UD71 204 aaPredicted RBP11.65□□□□□ -0.54
USP4-202ENST00000351842 RTCBQ9Y3I0 505 aaKnown RBP11.65□□□□□ -0.54
USP4-202ENST00000351842 BAG6P46379 1132 aa11.64□□□□□ -0.55
USP4-202ENST00000351842 ALDH1L2Q3SY69 923 aa11.64□□□□□ -0.55
USP4-202ENST00000351842 SYNE4Q8N205 404 aa11.64□□□□□ -0.55
USP4-202ENST00000351842 CCDC136Q96JN2 1154 aa11.64□□□□□ -0.55
USP4-202ENST00000351842 HYPKQ9NX55 129 aa11.64□□□□□ -0.55
USP4-202ENST00000351842 GTF2E1P29083 439 aaPredicted RBP11.64□□□□□ -0.55
USP4-202ENST00000351842 RFC4P35249 363 aa11.64□□□□□ -0.55
USP4-202ENST00000351842 DNAAF4Q8WXU2 420 aa11.64□□□□□ -0.55
USP4-202ENST00000351842 MEIS3Q99687 375 aa11.64□□□□□ -0.55
USP4-202ENST00000351842 DDX58O95786 925 aaKnown RBP11.64□□□□□ -0.55
USP4-202ENST00000351842 INTS5Q6P9B9 1019 aaKnown RBP11.64□□□□□ -0.55
USP4-202ENST00000351842 BABAM1Q9NWV8 329 aa11.64□□□□□ -0.55
USP4-202ENST00000351842 NEXNQ0ZGT2 675 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms