RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 CTNNA3Q9UI47 895 aa14.38□□□□□ -0.11
RTN3-203ENST00000341307 DLG5Q8TDM6 1919 aa14.37□□□□□ -0.11
RTN3-203ENST00000341307 ANKARQ7Z5J8 1434 aa14.37□□□□□ -0.11
RTN3-203ENST00000341307 PTMAP06454 111 aaKnown RBP14.37□□□□□ -0.11
RTN3-203ENST00000341307 ZKSCAN2Q63HK3 967 aa14.37□□□□□ -0.11
RTN3-203ENST00000341307 LRSAM1Q6UWE0 723 aa14.37□□□□□ -0.11
RTN3-203ENST00000341307 SPTLC3Q9NUV7 552 aa14.37□□□□□ -0.11
RTN3-203ENST00000341307 CALCOCO1Q9P1Z2 691 aa14.37□□□□□ -0.11
RTN3-203ENST00000341307 NOB1Q9ULX3 412 aaKnown RBP14.37□□□□□ -0.11
RTN3-203ENST00000341307 RIOK3O14730 519 aaKnown RBP14.37□□□□□ -0.11
RTN3-203ENST00000341307 TRIM27P14373 513 aa14.37□□□□□ -0.11
RTN3-203ENST00000341307 AMPHP49418 695 aa14.37□□□□□ -0.11
RTN3-203ENST00000341307 MCTP1Q6DN14 999 aa14.37□□□□□ -0.11
RTN3-203ENST00000341307 CNPY4Q8N129 248 aa14.37□□□□□ -0.11
RTN3-203ENST00000341307 MBIPQ9NS73 344 aa14.37□□□□□ -0.11
RTN3-203ENST00000341307 CLGNO14967 610 aa14.36□□□□□ -0.11
RTN3-203ENST00000341307 LMOD2Q6P5Q4 547 aa14.36□□□□□ -0.11
RTN3-203ENST00000341307 TSPYL1Q9H0U9 437 aa14.36□□□□□ -0.11
RTN3-203ENST00000341307 DDX41Q9UJV9 622 aaKnown RBP14.36□□□□□ -0.11
RTN3-203ENST00000341307 CT47B1P0C2W7 299 aaPredicted RBP14.35□□□□□ -0.11
RTN3-203ENST00000341307 MCM10Q7L590 875 aa14.35□□□□□ -0.11
RTN3-203ENST00000341307 GPT2Q8TD30 523 aa14.35□□□□□ -0.11
RTN3-203ENST00000341307 KIF2CQ99661 725 aa14.35□□□□□ -0.11
RTN3-203ENST00000341307 PSME1Q06323 249 aa14.35□□□□□ -0.11
RTN3-203ENST00000341307 DZIP1LQ8IYY4 767 aaKnown RBP14.35□□□□□ -0.11
RTN3-203ENST00000341307 GAS2L2Q8NHY3 880 aa14.35□□□□□ -0.11
RTN3-203ENST00000341307 KRT28Q7Z3Y7 464 aa14.34□□□□□ -0.11
RTN3-203ENST00000341307 MPNDQ8N594 471 aa14.34□□□□□ -0.11
RTN3-203ENST00000341307 TRERF1Q96PN7 1200 aa14.34□□□□□ -0.11
RTN3-203ENST00000341307 FLT4P35916 1363 aa14.34□□□□□ -0.11
RTN3-203ENST00000341307 PRR29P0C7W0 189 aa14.34□□□□□ -0.11
RTN3-203ENST00000341307 MVPQ14764 893 aaKnown RBP14.34□□□□□ -0.11
RTN3-203ENST00000341307 RNF214Q8ND24 703 aa14.34□□□□□ -0.11
RTN3-203ENST00000341307 LTV1Q96GA3 475 aaPredicted RBP14.34□□□□□ -0.11
RTN3-203ENST00000341307 MORC2Q9Y6X9 1032 aaPredicted RBP14.34□□□□□ -0.11
RTN3-203ENST00000341307 SBNO1A3KN83 1393 aa14.33□□□□□ -0.12
RTN3-203ENST00000341307 SYCE3A1L190 88 aa14.33□□□□□ -0.12
RTN3-203ENST00000341307 ERICH4A6NGS2 130 aa14.33□□□□□ -0.12
RTN3-203ENST00000341307 NCBP1Q09161 790 aaKnown RBP14.33□□□□□ -0.12
RTN3-203ENST00000341307 EFCC1Q9HA90 598 aa14.33□□□□□ -0.12
RTN3-203ENST00000341307 TMEM63CQ9P1W3 806 aa14.33□□□□□ -0.12
RTN3-203ENST00000341307 K7ELQ4 463 aaPredicted RBP14.33□□□□□ -0.12
RTN3-203ENST00000341307 ZNF853P0CG23 659 aa14.33□□□□□ -0.12
RTN3-203ENST00000341307 GNAI1P63096 354 aa14.33□□□□□ -0.12
RTN3-203ENST00000341307 ATF7IPQ6VMQ6 1270 aa14.33□□□□□ -0.12
RTN3-203ENST00000341307 C8orf58Q8NAV2 365 aa14.33□□□□□ -0.12
RTN3-203ENST00000341307 CABLES1Q8TDN4 633 aa14.33□□□□□ -0.12
RTN3-203ENST00000341307 EYA1Q99502 592 aa14.33□□□□□ -0.12
RTN3-203ENST00000341307 IFT57Q9NWB7 429 aa14.33□□□□□ -0.12
RTN3-203ENST00000341307 RGPD1P0DJD0 1748 aa14.32□□□□□ -0.12
RTN3-203ENST00000341307 MARF1Q9Y4F3 1742 aaKnown RBP14.32□□□□□ -0.12
RTN3-203ENST00000341307 LOC102724159A0A0B4J2E5 919 aa14.32□□□□□ -0.12
RTN3-203ENST00000341307 VAMP4O75379 141 aa14.32□□□□□ -0.12
RTN3-203ENST00000341307 PWP2Q15269 919 aaKnown RBP14.32□□□□□ -0.12
RTN3-203ENST00000341307 KRT24Q2M2I5 525 aa14.32□□□□□ -0.12
RTN3-203ENST00000341307 ITPRIPQ8IWB1 547 aa14.32□□□□□ -0.12
RTN3-203ENST00000341307 CFAP44Q96MT7 982 aa14.32□□□□□ -0.12
RTN3-203ENST00000341307 LMOD3Q0VAK6 560 aa14.31□□□□□ -0.12
RTN3-203ENST00000341307 TTC12Q9H892 705 aaPredicted RBP14.31□□□□□ -0.12
RTN3-203ENST00000341307 NUTM2BA6NNL0 878 aaPredicted RBP14.31□□□□□ -0.12
RTN3-203ENST00000341307 NUTM2EB1AL46 878 aaPredicted RBP14.31□□□□□ -0.12
RTN3-203ENST00000341307 APPP05067 770 aa14.31□□□□□ -0.12
RTN3-203ENST00000341307 HOXC9P31274 260 aa14.31□□□□□ -0.12
RTN3-203ENST00000341307 NUTM2AQ8IVF1 878 aaPredicted RBP14.31□□□□□ -0.12
RTN3-203ENST00000341307 TMEM57Q8N5G2 664 aa14.31□□□□□ -0.12
RTN3-203ENST00000341307 SOS2Q07890 1332 aaPredicted RBP14.3□□□□□ -0.12
RTN3-203ENST00000341307 NPHP3Q7Z494 1330 aa14.3□□□□□ -0.12
RTN3-203ENST00000341307 MTHFSDQ2M296 383 aaKnown RBP14.3□□□□□ -0.12
RTN3-203ENST00000341307 TWISTNBQ3B726 338 aaPredicted RBP14.3□□□□□ -0.12
RTN3-203ENST00000341307 DIAPH3Q9NSV4 1193 aa14.3□□□□□ -0.12
RTN3-203ENST00000341307 MIS18AQ9NYP9 233 aa14.3□□□□□ -0.12
RTN3-203ENST00000341307 CYP2E1P05181 493 aaPredicted RBP14.29□□□□□ -0.12
RTN3-203ENST00000341307 RWDD1Q9H446 243 aaPredicted RBP14.29□□□□□ -0.12
RTN3-203ENST00000341307 NSFL1CQ9UNZ2 370 aaKnown RBP14.29□□□□□ -0.12
RTN3-203ENST00000341307 PHLPP1O60346 1717 aa14.29□□□□□ -0.12
RTN3-203ENST00000341307 NOP2P46087 812 aaKnown RBP14.29□□□□□ -0.12
RTN3-203ENST00000341307 USHBP1Q8N6Y0 703 aa14.29□□□□□ -0.12
RTN3-203ENST00000341307 ARHGEF10O15013 1369 aa14.28□□□□□ -0.12
RTN3-203ENST00000341307 ALDH1L2Q3SY69 923 aa14.28□□□□□ -0.12
RTN3-203ENST00000341307 AXDND1Q5T1B0 1012 aaPredicted RBP14.28□□□□□ -0.12
RTN3-203ENST00000341307 KIF18AQ8NI77 898 aa14.28□□□□□ -0.12
RTN3-203ENST00000341307 PXDNQ92626 1479 aa14.28□□□□□ -0.12
RTN3-203ENST00000341307 IGSF1Q8N6C5 1336 aa14.28□□□□□ -0.12
RTN3-203ENST00000341307 KIF16BQ96L93 1317 aa14.28□□□□□ -0.12
RTN3-203ENST00000341307 PRPF40AO75400 957 aaKnown RBP14.28□□□□□ -0.12
RTN3-203ENST00000341307 ZNF622Q969S3 477 aaKnown RBP eCLIP14.28□□□□□ -0.123e-7■■■■□ 19.7
RTN3-203ENST00000341307 RBM42Q9BTD8 480 aaKnown RBP14.28□□□□□ -0.12
RTN3-203ENST00000341307 COL16A1Q07092 1604 aaPredicted RBP14.27□□□□□ -0.12
RTN3-203ENST00000341307 RAD51AP2Q09MP3 1159 aa14.27□□□□□ -0.13
RTN3-203ENST00000341307 MRPL50Q8N5N7 158 aaKnown RBP14.27□□□□□ -0.13
RTN3-203ENST00000341307 LRRC59Q96AG4 307 aaKnown RBP14.27□□□□□ -0.13
RTN3-203ENST00000341307 HNRNPH2P55795 449 aaKnown RBP14.26□□□□□ -0.13
RTN3-203ENST00000341307 PKP1Q13835 747 aa14.26□□□□□ -0.13
RTN3-203ENST00000341307 SYCP1Q15431 976 aa14.26□□□□□ -0.13
RTN3-203ENST00000341307 RSPH14Q9UHP6 348 aa14.26□□□□□ -0.13
RTN3-203ENST00000341307 IPO8O15397 1037 aaKnown RBP14.25□□□□□ -0.13
RTN3-203ENST00000341307 ADAMTS2O95450 1211 aa14.25□□□□□ -0.13
RTN3-203ENST00000341307 KRT222Q8N1A0 295 aa14.25□□□□□ -0.13
RTN3-203ENST00000341307 KDRP35968 1356 aa14.25□□□□□ -0.13
RTN3-203ENST00000341307 SPATA31A3Q5VYP0 1347 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms