RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 MX1P20591 662 aa14.14□□□□□ -0.15
CUX1-202ENST00000292538 XAGE3Q8WTP9 111 aa14.14□□□□□ -0.15
CUX1-202ENST00000292538 SIL1Q9H173 461 aa14.14□□□□□ -0.15
CUX1-202ENST00000292538 TNS3Q68CZ2 1445 aa14.13□□□□□ -0.15
CUX1-202ENST00000292538 CD2BP2O95400 341 aaKnown RBP14.13□□□□□ -0.15
CUX1-202ENST00000292538 LARP1Q6PKG0 1096 aaKnown RBP14.13□□□□□ -0.15
CUX1-202ENST00000292538 KSR2Q6VAB6 950 aa14.13□□□□□ -0.15
CUX1-202ENST00000292538 ATP5J2-PTCD1G3V325 749 aa14.12□□□□□ -0.15
CUX1-202ENST00000292538 MYD88Q99836 296 aa14.12□□□□□ -0.15
CUX1-202ENST00000292538 CHMP4AQ9BY43 222 aa14.12□□□□□ -0.15
CUX1-202ENST00000292538 DDX58O95786 925 aaKnown RBP14.12□□□□□ -0.15
CUX1-202ENST00000292538 HOXB7P09629 217 aa14.12□□□□□ -0.15
CUX1-202ENST00000292538 HYPKQ9NX55 129 aa14.12□□□□□ -0.15
CUX1-202ENST00000292538 SOS1Q07889 1333 aaPredicted RBP14.12□□□□□ -0.15
CUX1-202ENST00000292538 ADCY9O60503 1353 aa14.12□□□□□ -0.15
CUX1-202ENST00000292538 MED1Q15648 1581 aaPredicted RBP14.11□□□□□ -0.15
CUX1-202ENST00000292538 MEGF6O75095 1541 aa14.11□□□□□ -0.15
CUX1-202ENST00000292538 DCAF5Q96JK2 942 aa14.11□□□□□ -0.15
CUX1-202ENST00000292538 ZCRB1Q8TBF4 217 aaKnown RBP14.11□□□□□ -0.15
CUX1-202ENST00000292538 RBM25P49756 843 aaKnown RBP14.11□□□□□ -0.15
CUX1-202ENST00000292538 NOL8Q76FK4 1167 aaKnown RBP14.11□□□□□ -0.15
CUX1-202ENST00000292538 UNC5CLQ8IV45 518 aa14.11□□□□□ -0.15
CUX1-202ENST00000292538 KLHDC4Q8TBB5 520 aa14.11□□□□□ -0.15
CUX1-202ENST00000292538 DDX21Q9NR30 783 aaKnown RBP eCLIP14.11□□□□□ -0.151e-7■□□□□ 10.9
CUX1-202ENST00000292538 CCDC9Q9Y3X0 531 aaKnown RBP14.11□□□□□ -0.15
CUX1-202ENST00000292538 RHPN1Q8TCX5 695 aa14.1□□□□□ -0.15
CUX1-202ENST00000292538 SLIT3O75094 1523 aa14.1□□□□□ -0.15
CUX1-202ENST00000292538 NEXNQ0ZGT2 675 aa14.1□□□□□ -0.15
CUX1-202ENST00000292538 ANO2Q9NQ90 1003 aa14.09□□□□□ -0.15
CUX1-202ENST00000292538 SNRPA1P09661 255 aaKnown RBP14.09□□□□□ -0.15
CUX1-202ENST00000292538 PDIA6Q15084 440 aa14.09□□□□□ -0.15
CUX1-202ENST00000292538 SYTL4Q96C24 671 aaPredicted RBP14.09□□□□□ -0.15
CUX1-202ENST00000292538 FMNL2Q96PY5 1086 aa14.09□□□□□ -0.15
CUX1-202ENST00000292538 KIF2CQ99661 725 aa14.09□□□□□ -0.15
CUX1-202ENST00000292538 CHMP3Q9Y3E7 222 aa14.09□□□□□ -0.15
CUX1-202ENST00000292538 SSH3Q8TE77 659 aa14.08□□□□□ -0.15
CUX1-202ENST00000292538 BICC1Q9H694 974 aaKnown RBP14.08□□□□□ -0.15
CUX1-202ENST00000292538 KDM6AO15550 1401 aaPredicted RBP14.08□□□□□ -0.16
CUX1-202ENST00000292538 SUCLG2Q96I99 432 aa14.08□□□□□ -0.16
CUX1-202ENST00000292538 BTG4Q9NY30 223 aa14.08□□□□□ -0.16
CUX1-202ENST00000292538 IBTKQ9P2D0 1353 aaPredicted RBP14.08□□□□□ -0.16
CUX1-202ENST00000292538 GRM8O00222 908 aa14.08□□□□□ -0.16
CUX1-202ENST00000292538 ANKRD13DQ6ZTN6 518 aa14.08□□□□□ -0.16
CUX1-202ENST00000292538 USP26Q9BXU7 913 aa14.08□□□□□ -0.16
CUX1-202ENST00000292538 STRCP1A6NGW2 1772 aa14.07□□□□□ -0.16
CUX1-202ENST00000292538 GZF1Q9H116 711 aaPredicted RBP14.07□□□□□ -0.16
CUX1-202ENST00000292538 ERC2O15083 957 aa14.07□□□□□ -0.16
CUX1-202ENST00000292538 IL2RBP14784 551 aa14.07□□□□□ -0.16
CUX1-202ENST00000292538 ANTXR1Q9H6X2 564 aa14.07□□□□□ -0.16
CUX1-202ENST00000292538 A1BGP04217 495 aa14.06□□□□□ -0.16
CUX1-202ENST00000292538 LINS1Q8NG48 757 aa14.06□□□□□ -0.16
CUX1-202ENST00000292538 KIF1BPQ96EK5 621 aa14.06□□□□□ -0.16
CUX1-202ENST00000292538 WDR17Q8IZU2 1322 aa14.06□□□□□ -0.16
CUX1-202ENST00000292538 REC8O95072 547 aa14.06□□□□□ -0.16
CUX1-202ENST00000292538 ADAMTS2O95450 1211 aa14.06□□□□□ -0.16
CUX1-202ENST00000292538 IGKV5-2P06315 115 aa14.06□□□□□ -0.16
CUX1-202ENST00000292538 DCCP43146 1447 aa14.06□□□□□ -0.16
CUX1-202ENST00000292538 RGPD5Q99666 1765 aa14.06□□□□□ -0.16
CUX1-202ENST00000292538 UBE3BQ7Z3V4 1068 aa14.05□□□□□ -0.16
CUX1-202ENST00000292538 CCDC8Q9H0W5 538 aaPredicted RBP14.05□□□□□ -0.16
CUX1-202ENST00000292538 ZBTB3Q9H5J0 574 aa14.05□□□□□ -0.16
CUX1-202ENST00000292538 IFIT2P09913 472 aaKnown RBP14.05□□□□□ -0.16
CUX1-202ENST00000292538 CLASRPQ8N2M8 674 aaKnown RBP14.05□□□□□ -0.16
CUX1-202ENST00000292538 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.05□□□□□ -0.167e-7■■□□□ 13.1
CUX1-202ENST00000292538 AACSQ86V21 672 aa14.04□□□□□ -0.16
CUX1-202ENST00000292538 NCAPD2Q15021 1401 aa14.04□□□□□ -0.16
CUX1-202ENST00000292538 G3BP1Q13283 466 aaKnown RBP eCLIP14.04□□□□□ -0.16
CUX1-202ENST00000292538 SOS2Q07890 1332 aaPredicted RBP14.04□□□□□ -0.16
CUX1-202ENST00000292538 TRPM3Q9HCF6 1732 aaPredicted RBP14.04□□□□□ -0.16
CUX1-202ENST00000292538 RAB11FIP3O75154 756 aa14.04□□□□□ -0.16
CUX1-202ENST00000292538 ALDH1L1O75891 902 aa14.04□□□□□ -0.16
CUX1-202ENST00000292538 POLA2Q14181 598 aa14.04□□□□□ -0.16
CUX1-202ENST00000292538 CHMP5Q9NZZ3 219 aa14.04□□□□□ -0.16
CUX1-202ENST00000292538 LMTK3Q96Q04 1460 aa14.04□□□□□ -0.16
CUX1-202ENST00000292538 LRRC37A3O60309 1634 aa14.03□□□□□ -0.16
CUX1-202ENST00000292538 NUTM2BA6NNL0 878 aaPredicted RBP14.03□□□□□ -0.16
CUX1-202ENST00000292538 NUTM2EB1AL46 878 aaPredicted RBP14.03□□□□□ -0.16
CUX1-202ENST00000292538 K7ELQ4 463 aaPredicted RBP14.03□□□□□ -0.16
CUX1-202ENST00000292538 CWC27Q6UX04 472 aaKnown RBP14.03□□□□□ -0.16
CUX1-202ENST00000292538 NUTM2AQ8IVF1 878 aaPredicted RBP14.03□□□□□ -0.16
CUX1-202ENST00000292538 A0A087WZG4 1122 aa14.03□□□□□ -0.16
CUX1-202ENST00000292538 NEURL1BA8MQ27 555 aa14.03□□□□□ -0.16
CUX1-202ENST00000292538 PIP4K2BP78356 416 aa14.03□□□□□ -0.16
CUX1-202ENST00000292538 GSE1Q14687 1217 aa14.03□□□□□ -0.16
CUX1-202ENST00000292538 EPHA10Q5JZY3 1008 aa14.03□□□□□ -0.16
CUX1-202ENST00000292538 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.03□□□□□ -0.16
CUX1-202ENST00000292538 PCDH11XQ9BZA7 1347 aa14.03□□□□□ -0.16
CUX1-202ENST00000292538 PCDH11YQ9BZA8 1340 aa14.03□□□□□ -0.16
CUX1-202ENST00000292538 CHMLP26374 656 aa14.02□□□□□ -0.16
CUX1-202ENST00000292538 TTLL7Q6ZT98 887 aa14.02□□□□□ -0.16
CUX1-202ENST00000292538 CCDC85AQ96PX6 553 aaPredicted RBP14.02□□□□□ -0.16
CUX1-202ENST00000292538 OSBPL3Q9H4L5 887 aa14.02□□□□□ -0.16
CUX1-202ENST00000292538 KIF1AQ12756 1690 aa14.02□□□□□ -0.16
CUX1-202ENST00000292538 GCKRQ14397 625 aa14.02□□□□□ -0.17
CUX1-202ENST00000292538 FOXD4L5Q5VV16 416 aaPredicted RBP14.02□□□□□ -0.17
CUX1-202ENST00000292538 FOXD4L4Q8WXT5 416 aaPredicted RBP14.02□□□□□ -0.17
CUX1-202ENST00000292538 ESYT1Q9BSJ8 1104 aa14.02□□□□□ -0.17
CUX1-202ENST00000292538 NEK4P51957 841 aa14.01□□□□□ -0.17
CUX1-202ENST00000292538 HSP90AB4PQ58FF6 505 aa14.01□□□□□ -0.17
CUX1-202ENST00000292538 KAZALD1Q96I82 304 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms