RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 REREQ9P2R6 1566 aa20.27■□□□□ 0.84
VPS54-201ENST00000272322 RNF214Q8ND24 703 aa20.27■□□□□ 0.84
VPS54-201ENST00000272322 PROSER2Q86WR7 435 aaPredicted RBP20.26■□□□□ 0.83
VPS54-201ENST00000272322 NSFL1CQ9UNZ2 370 aaKnown RBP20.26■□□□□ 0.83
VPS54-201ENST00000272322 CCDC8Q9H0W5 538 aaPredicted RBP20.25■□□□□ 0.83
VPS54-201ENST00000272322 KIF13AQ9H1H9 1805 aa20.25■□□□□ 0.83
VPS54-201ENST00000272322 ZDHHC9Q9Y397 364 aa20.25■□□□□ 0.83
VPS54-201ENST00000272322 PLEKHO1Q53GL0 409 aaPredicted RBP20.24■□□□□ 0.83
VPS54-201ENST00000272322 NAP1L5Q96NT1 182 aaPredicted RBP20.24■□□□□ 0.83
VPS54-201ENST00000272322 KIF24Q5T7B8 1368 aa20.24■□□□□ 0.83
VPS54-201ENST00000272322 DIP2AQ14689 1571 aa20.24■□□□□ 0.83
VPS54-201ENST00000272322 FAM43AQ8N2R8 423 aa20.24■□□□□ 0.83
VPS54-201ENST00000272322 NDUFB9Q9Y6M9 179 aa20.24■□□□□ 0.83
VPS54-201ENST00000272322 MCCP23508 829 aa20.23■□□□□ 0.83
VPS54-201ENST00000272322 NCOA3Q9Y6Q9 1424 aa20.23■□□□□ 0.83
VPS54-201ENST00000272322 TCEANC2Q96MN5 208 aa20.22■□□□□ 0.83
VPS54-201ENST00000272322 NUCB2P80303 420 aa20.22■□□□□ 0.83
VPS54-201ENST00000272322 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.22■□□□□ 0.83
VPS54-201ENST00000272322 IBTKQ9P2D0 1353 aaPredicted RBP20.22■□□□□ 0.83
VPS54-201ENST00000272322 AKAP12Q02952 1782 aa20.21■□□□□ 0.83
VPS54-201ENST00000272322 BEND3Q5T5X7 828 aa20.21■□□□□ 0.83
VPS54-201ENST00000272322 KRT28Q7Z3Y7 464 aa20.21■□□□□ 0.83
VPS54-201ENST00000272322 HTATSF1O43719 755 aaKnown RBP20.21■□□□□ 0.83
VPS54-201ENST00000272322 NFATC2IPQ8NCF5 419 aa20.21■□□□□ 0.83
VPS54-201ENST00000272322 ZNF330Q9Y3S2 320 aaPredicted RBP20.21■□□□□ 0.83
VPS54-201ENST00000272322 KCNJ4P48050 445 aa20.21■□□□□ 0.83
VPS54-201ENST00000272322 RNMTO43148 476 aaKnown RBP20.2■□□□□ 0.82
VPS54-201ENST00000272322 NASPP49321 788 aaPredicted RBP20.2■□□□□ 0.82
VPS54-201ENST00000272322 RIC3Q7Z5B4 369 aa20.2■□□□□ 0.82
VPS54-201ENST00000272322 SYCE3A1L190 88 aa20.19■□□□□ 0.82
VPS54-201ENST00000272322 KIAA1211Q6ZU35 1233 aa20.19■□□□□ 0.82
VPS54-201ENST00000272322 RASEFQ8IZ41 740 aa20.19■□□□□ 0.82
VPS54-201ENST00000272322 SSH3Q8TE77 659 aa20.19■□□□□ 0.82
VPS54-201ENST00000272322 AACSQ86V21 672 aa20.19■□□□□ 0.82
VPS54-201ENST00000272322 LMBRD1Q9NUN5 540 aa20.19■□□□□ 0.82
VPS54-201ENST00000272322 SKOR2Q2VWA4 1001 aaPredicted RBP20.19■□□□□ 0.82
VPS54-201ENST00000272322 EDC3Q96F86 508 aaKnown RBP20.19■□□□□ 0.82
VPS54-201ENST00000272322 OSBPL3Q9H4L5 887 aa20.19■□□□□ 0.82
VPS54-201ENST00000272322 ATP5J2-PTCD1G3V325 749 aa20.18■□□□□ 0.82
VPS54-201ENST00000272322 PTCD1O75127 700 aaKnown RBP20.18■□□□□ 0.82
VPS54-201ENST00000272322 IFIT2P09913 472 aaKnown RBP20.18■□□□□ 0.82
VPS54-201ENST00000272322 BOLA2Q9H3K6 86 aa20.18■□□□□ 0.82
VPS54-201ENST00000272322 PRIM1P49642 420 aaKnown RBP20.18■□□□□ 0.82
VPS54-201ENST00000272322 GPT2Q8TD30 523 aa20.18■□□□□ 0.82
VPS54-201ENST00000272322 KIF1BPQ96EK5 621 aa20.18■□□□□ 0.82
VPS54-201ENST00000272322 DIAPH3Q9NSV4 1193 aa20.18■□□□□ 0.82
VPS54-201ENST00000272322 ERBB4Q15303 1308 aa20.17■□□□□ 0.82
VPS54-201ENST00000272322 AKAP4Q5JQC9 854 aa20.17■□□□□ 0.82
VPS54-201ENST00000272322 CLASRPQ8N2M8 674 aaKnown RBP20.17■□□□□ 0.82
VPS54-201ENST00000272322 DBF4Q9UBU7 674 aaPredicted RBP20.17■□□□□ 0.82
VPS54-201ENST00000272322 CHMP3Q9Y3E7 222 aa20.17■□□□□ 0.82
VPS54-201ENST00000272322 KCNH5Q8NCM2 988 aa20.17■□□□□ 0.82
VPS54-201ENST00000272322 GIGYF1O75420 1035 aaPredicted RBP20.16■□□□□ 0.82
VPS54-201ENST00000272322 ZSCAN23Q3MJ62 389 aa20.16■□□□□ 0.82
VPS54-201ENST00000272322 RAPGEF4Q8WZA2 1011 aa20.16■□□□□ 0.82
VPS54-201ENST00000272322 SALL3Q9BXA9 1300 aa20.16■□□□□ 0.82
VPS54-201ENST00000272322 CHGBP05060 677 aa20.15■□□□□ 0.82
VPS54-201ENST00000272322 COL9A3Q14050 684 aaPredicted RBP20.15■□□□□ 0.82
VPS54-201ENST00000272322 KLHL40Q2TBA0 621 aa20.15■□□□□ 0.82
VPS54-201ENST00000272322 PRPF40BQ6NWY9 871 aaKnown RBP20.15■□□□□ 0.82
VPS54-201ENST00000272322 TLR7Q9NYK1 1049 aaKnown RBP20.15■□□□□ 0.82
VPS54-201ENST00000272322 ARHGEF25Q86VW2 580 aa20.15■□□□□ 0.82
VPS54-201ENST00000272322 PI4K2BQ8TCG2 481 aa20.15■□□□□ 0.82
VPS54-201ENST00000272322 ANP32BQ92688 251 aaKnown RBP20.15■□□□□ 0.82
VPS54-201ENST00000272322 BICC1Q9H694 974 aaKnown RBP20.15■□□□□ 0.82
VPS54-201ENST00000272322 TAOK2Q9UL54 1235 aa20.14■□□□□ 0.82
VPS54-201ENST00000272322 PPFIA3O75145 1194 aa20.14■□□□□ 0.81
VPS54-201ENST00000272322 CASTP20810 708 aaKnown RBP20.14■□□□□ 0.81
VPS54-201ENST00000272322 PTH1RQ03431 593 aa20.14■□□□□ 0.81
VPS54-201ENST00000272322 SUCLG2Q96I99 432 aa20.14■□□□□ 0.81
VPS54-201ENST00000272322 PIK3C2AO00443 1686 aa20.14■□□□□ 0.81
VPS54-201ENST00000272322 CNTROBQ8N137 903 aa20.14■□□□□ 0.81
VPS54-201ENST00000272322 MYD88Q99836 296 aa20.14■□□□□ 0.81
VPS54-201ENST00000272322 COPS6Q7L5N1 327 aa20.13■□□□□ 0.81
VPS54-201ENST00000272322 TMEM63CQ9P1W3 806 aa20.13■□□□□ 0.81
VPS54-201ENST00000272322 GADD45BO75293 160 aaPredicted RBP20.13■□□□□ 0.81
VPS54-201ENST00000272322 FAM227BQ96M60 508 aa20.13■□□□□ 0.81
VPS54-201ENST00000272322 RBSNQ9H1K0 784 aa20.13■□□□□ 0.81
VPS54-201ENST00000272322 USP16Q9Y5T5 823 aa20.13■□□□□ 0.81
VPS54-201ENST00000272322 PLCB2Q00722 1185 aa20.12■□□□□ 0.81
VPS54-201ENST00000272322 ADCY9O60503 1353 aa20.12■□□□□ 0.81
VPS54-201ENST00000272322 ADCK5Q3MIX3 580 aa20.12■□□□□ 0.81
VPS54-201ENST00000272322 NECAB1Q8N987 351 aa20.12■□□□□ 0.81
VPS54-201ENST00000272322 XAGE3Q8WTP9 111 aa20.12■□□□□ 0.81
VPS54-201ENST00000272322 CWC22Q9HCG8 908 aaKnown RBP20.12■□□□□ 0.81
VPS54-201ENST00000272322 NRKQ7Z2Y5 1582 aa20.11■□□□□ 0.81
VPS54-201ENST00000272322 ESPNB1AK53 854 aa20.11■□□□□ 0.81
VPS54-201ENST00000272322 JAKMIP1Q96N16 626 aaKnown RBP20.11■□□□□ 0.81
VPS54-201ENST00000272322 G3BP1Q13283 466 aaKnown RBP eCLIP20.11■□□□□ 0.81
VPS54-201ENST00000272322 AK2P54819 239 aa20.11■□□□□ 0.81
VPS54-201ENST00000272322 KSR2Q6VAB6 950 aa20.11■□□□□ 0.81
VPS54-201ENST00000272322 CCDC83Q8IWF9 413 aa20.11■□□□□ 0.81
VPS54-201ENST00000272322 ZNF496Q96IT1 587 aaPredicted RBP20.1■□□□□ 0.81
VPS54-201ENST00000272322 SNX14Q9Y5W7 946 aa20.1■□□□□ 0.81
VPS54-201ENST00000272322 STAP2Q9UGK3 403 aa20.1■□□□□ 0.81
VPS54-201ENST00000272322 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.1■□□□□ 0.81
VPS54-201ENST00000272322 FIBPO43427 364 aa20.1■□□□□ 0.81
VPS54-201ENST00000272322 LARGE1O95461 756 aa20.1■□□□□ 0.81
VPS54-201ENST00000272322 CYP2E1P05181 493 aaPredicted RBP20.1■□□□□ 0.81
VPS54-201ENST00000272322 HSPA2P54652 639 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms