RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 POLA2Q14181 598 aa19.98■□□□□ 0.79
HOXD3-201ENST00000249440 KDM3BQ7LBC6 1761 aa19.98■□□□□ 0.79
HOXD3-201ENST00000249440 NFAT5O94916 1531 aa19.98■□□□□ 0.79
HOXD3-201ENST00000249440 NCLP19338 710 aaKnown RBP19.98■□□□□ 0.79
HOXD3-201ENST00000249440 ZNF445P59923 1031 aa19.98■□□□□ 0.79
HOXD3-201ENST00000249440 IL17RAQ96F46 866 aa19.98■□□□□ 0.79
HOXD3-201ENST00000249440 LGR6Q9HBX8 967 aa19.98■□□□□ 0.79
HOXD3-201ENST00000249440 PSME1Q06323 249 aa19.97■□□□□ 0.79
HOXD3-201ENST00000249440 UNC5CLQ8IV45 518 aa19.97■□□□□ 0.79
HOXD3-201ENST00000249440 ANP32BQ92688 251 aaKnown RBP19.97■□□□□ 0.79
HOXD3-201ENST00000249440 PALD1Q9ULE6 856 aa19.97■□□□□ 0.79
HOXD3-201ENST00000249440 ADGRL3Q9HAR2 1447 aa19.97■□□□□ 0.79
HOXD3-201ENST00000249440 NASPP49321 788 aaPredicted RBP19.97■□□□□ 0.79
HOXD3-201ENST00000249440 CUL4AQ13619 759 aa19.97■□□□□ 0.79
HOXD3-201ENST00000249440 CAVIN1Q6NZI2 390 aaKnown RBP19.97■□□□□ 0.79
HOXD3-201ENST00000249440 RHPN1Q8TCX5 695 aa19.97■□□□□ 0.79
HOXD3-201ENST00000249440 DNAAF4Q8WXU2 420 aa19.97■□□□□ 0.79
HOXD3-201ENST00000249440 SRGAP3O43295 1099 aa19.96■□□□□ 0.79
HOXD3-201ENST00000249440 PRPF40AO75400 957 aaKnown RBP19.96■□□□□ 0.79
HOXD3-201ENST00000249440 TEFQ10587 303 aa19.96■□□□□ 0.79
HOXD3-201ENST00000249440 AKAP4Q5JQC9 854 aa19.96■□□□□ 0.79
HOXD3-201ENST00000249440 KIF1BPQ96EK5 621 aa19.96■□□□□ 0.79
HOXD3-201ENST00000249440 INTS4Q96HW7 963 aaKnown RBP19.96■□□□□ 0.79
HOXD3-201ENST00000249440 CHPF2Q9P2E5 772 aa19.96■□□□□ 0.79
HOXD3-201ENST00000249440 CCDC173Q0VFZ6 552 aa19.96■□□□□ 0.79
HOXD3-201ENST00000249440 NUTM1Q86Y26 1132 aa19.96■□□□□ 0.79
HOXD3-201ENST00000249440 PI4KAP2A4QPH2 592 aa19.95■□□□□ 0.78
HOXD3-201ENST00000249440 ESPNB1AK53 854 aa19.95■□□□□ 0.78
HOXD3-201ENST00000249440 BEND3Q5T5X7 828 aa19.95■□□□□ 0.78
HOXD3-201ENST00000249440 PI4KAP1Q8N8J0 262 aa19.95■□□□□ 0.78
HOXD3-201ENST00000249440 ORAI2Q96SN7 254 aa19.95■□□□□ 0.78
HOXD3-201ENST00000249440 BTBD11A6QL63 1104 aa19.94■□□□□ 0.78
HOXD3-201ENST00000249440 NBPF7P0C2Y1 421 aaPredicted RBP19.94■□□□□ 0.78
HOXD3-201ENST00000249440 ZSCAN23Q3MJ62 389 aa19.94■□□□□ 0.78
HOXD3-201ENST00000249440 HSP90AB4PQ58FF6 505 aa19.94■□□□□ 0.78
HOXD3-201ENST00000249440 LMO7Q8WWI1 1683 aa19.94■□□□□ 0.78
HOXD3-201ENST00000249440 PHRF1Q9P1Y6 1649 aaKnown RBP19.94■□□□□ 0.78
HOXD3-201ENST00000249440 PLEKHO1Q53GL0 409 aaPredicted RBP19.94■□□□□ 0.78
HOXD3-201ENST00000249440 ESCO1Q5FWF5 840 aa19.94■□□□□ 0.78
HOXD3-201ENST00000249440 RGPD2P0DJD1 1756 aa19.94■□□□□ 0.78
HOXD3-201ENST00000249440 AMOTQ4VCS5 1084 aa19.93■□□□□ 0.78
HOXD3-201ENST00000249440 PI4K2BQ8TCG2 481 aa19.93■□□□□ 0.78
HOXD3-201ENST00000249440 ZBTB7CA1YPR0 619 aa19.92■□□□□ 0.78
HOXD3-201ENST00000249440 HSPA4P34932 840 aa19.92■□□□□ 0.78
HOXD3-201ENST00000249440 ZNF530Q6P9A1 599 aaPredicted RBP19.92■□□□□ 0.78
HOXD3-201ENST00000249440 DDX17Q92841 729 aaKnown RBP19.92■□□□□ 0.78
HOXD3-201ENST00000249440 PPP1R9BQ96SB3 815 aa19.92■□□□□ 0.78
HOXD3-201ENST00000249440 BRD1O95696 1058 aa19.92■□□□□ 0.78
HOXD3-201ENST00000249440 XPCQ01831 940 aaPredicted RBP19.91■□□□□ 0.78
HOXD3-201ENST00000249440 CNTROBQ8N137 903 aa19.91■□□□□ 0.78
HOXD3-201ENST00000249440 DBF4Q9UBU7 674 aaPredicted RBP19.91■□□□□ 0.78
HOXD3-201ENST00000249440 KCNQ3O43525 872 aa19.91■□□□□ 0.78
HOXD3-201ENST00000249440 GPT2Q8TD30 523 aa19.91■□□□□ 0.78
HOXD3-201ENST00000249440 MPRIPQ6WCQ1 1025 aa19.9■□□□□ 0.78
HOXD3-201ENST00000249440 LRRC59Q96AG4 307 aaKnown RBP19.9■□□□□ 0.78
HOXD3-201ENST00000249440 C1orf141Q5JVX7 400 aa19.9■□□□□ 0.78
HOXD3-201ENST00000249440 UPF3BQ9BZI7 483 aaKnown RBP19.9■□□□□ 0.78
HOXD3-201ENST00000249440 IL25Q9H293 177 aa19.9■□□□□ 0.78
HOXD3-201ENST00000249440 NCAPD2Q15021 1401 aa19.89■□□□□ 0.77
HOXD3-201ENST00000249440 ADCY9O60503 1353 aa19.89■□□□□ 0.77
HOXD3-201ENST00000249440 SGSM2O43147 1006 aa19.88■□□□□ 0.77
HOXD3-201ENST00000249440 MAP4K4O95819 1239 aaPredicted RBP19.88■□□□□ 0.77
HOXD3-201ENST00000249440 NOL8Q76FK4 1167 aaKnown RBP19.88■□□□□ 0.77
HOXD3-201ENST00000249440 MBD3O95983 291 aa19.88■□□□□ 0.77
HOXD3-201ENST00000249440 HDAC5Q9UQL6 1122 aa19.88■□□□□ 0.77
HOXD3-201ENST00000249440 ERBB4Q15303 1308 aa19.88■□□□□ 0.77
HOXD3-201ENST00000249440 TTC41PQ6P2S7 1318 aa19.88■□□□□ 0.77
HOXD3-201ENST00000249440 RAD50Q92878 1312 aa19.88■□□□□ 0.77
HOXD3-201ENST00000249440 RNMTO43148 476 aaKnown RBP19.87■□□□□ 0.77
HOXD3-201ENST00000249440 ANXA1P04083 346 aa19.87■□□□□ 0.77
HOXD3-201ENST00000249440 MTX1Q13505 466 aa19.87■□□□□ 0.77
HOXD3-201ENST00000249440 FOXD4L5Q5VV16 416 aaPredicted RBP19.87■□□□□ 0.77
HOXD3-201ENST00000249440 FOXD4L4Q8WXT5 416 aaPredicted RBP19.87■□□□□ 0.77
HOXD3-201ENST00000249440 GCP02774 474 aa19.87■□□□□ 0.77
HOXD3-201ENST00000249440 OS9Q13438 667 aaPredicted RBP19.87■□□□□ 0.77
HOXD3-201ENST00000249440 C19orf44Q9H6X5 657 aa19.87■□□□□ 0.77
HOXD3-201ENST00000249440 USP42Q9H9J4 1324 aaKnown RBP19.87■□□□□ 0.77
HOXD3-201ENST00000249440 OVOS2A0A0G2JMS6 1433 aa19.87■□□□□ 0.77
HOXD3-201ENST00000249440 ALDH1L1O75891 902 aa19.86■□□□□ 0.77
HOXD3-201ENST00000249440 GLRX3O76003 335 aaKnown RBP19.86■□□□□ 0.77
HOXD3-201ENST00000249440 KIAA1211Q6ZU35 1233 aa19.86■□□□□ 0.77
HOXD3-201ENST00000249440 ARHGEF25Q86VW2 580 aa19.86■□□□□ 0.77
HOXD3-201ENST00000249440 C9orf78Q9NZ63 289 aaPredicted RBP19.86■□□□□ 0.77
HOXD3-201ENST00000249440 PLEKHG5O94827 1062 aa19.85■□□□□ 0.77
HOXD3-201ENST00000249440 PRIM1P49642 420 aaKnown RBP19.85■□□□□ 0.77
HOXD3-201ENST00000249440 CLASRPQ8N2M8 674 aaKnown RBP19.85■□□□□ 0.77
HOXD3-201ENST00000249440 GIGYF1O75420 1035 aaPredicted RBP19.85■□□□□ 0.77
HOXD3-201ENST00000249440 KSR2Q6VAB6 950 aa19.85■□□□□ 0.77
HOXD3-201ENST00000249440 RBM27Q9P2N5 1060 aaKnown RBP19.85■□□□□ 0.77
HOXD3-201ENST00000249440 MAP3K2Q9Y2U5 619 aa19.85■□□□□ 0.77
HOXD3-201ENST00000249440 CHAMP1Q96JM3 812 aa19.84■□□□□ 0.77
HOXD3-201ENST00000249440 LSG1Q9H089 658 aaKnown RBP19.84■□□□□ 0.77
HOXD3-201ENST00000249440 TMEM63CQ9P1W3 806 aa19.84■□□□□ 0.77
HOXD3-201ENST00000249440 CRYBG1Q9Y4K1 1723 aa19.84■□□□□ 0.77
HOXD3-201ENST00000249440 LRSAM1Q6UWE0 723 aa19.84■□□□□ 0.77
HOXD3-201ENST00000249440 RBSNQ9H1K0 784 aa19.84■□□□□ 0.77
HOXD3-201ENST00000249440 SNX14Q9Y5W7 946 aa19.84■□□□□ 0.77
HOXD3-201ENST00000249440 WDR33Q9C0J8 1336 aaKnown RBP19.83■□□□□ 0.77
HOXD3-201ENST00000249440 CWC27Q6UX04 472 aaKnown RBP19.83■□□□□ 0.76
HOXD3-201ENST00000249440 ERC1Q8IUD2 1116 aa19.83■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms