RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PGBD2Q6P3X8 592 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 MRPL41Q8IXM3 137 aaKnown RBP19.82■□□□□ 0.76
UPF1-207ENST00000599848 ARMC10Q8N2F6 343 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 SLC35F5Q8WV83 523 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 TGM7Q96PF1 710 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 USB1Q9BQ65 265 aaKnown RBP19.82■□□□□ 0.76
UPF1-207ENST00000599848 KCNK13Q9HB14 408 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 CLEC4AQ9UMR7 237 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 ENTPD2Q9Y5L3 495 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 LCHNA4D1U4 455 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 CLIC1O00299 241 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 BTN3A3O00478 584 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 TRMUO75648 421 aaKnown RBP19.82■□□□□ 0.76
UPF1-207ENST00000599848 RAB8AP61006 207 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 FOLH1Q04609 750 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 CARTPTQ16568 116 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 TTMPQ5BVD1 217 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 SLC15A3Q8IY34 581 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 SGIP1Q9BQI5 828 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 FAM227AF5H4B4 570 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 COCHO43405 550 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 FOLR3P41439 243 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 HERV-K104P61576 105 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 NR0B2Q15466 257 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 AKIRIN2Q53H80 203 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 LIPJQ5W064 366 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 CMASQ8NFW8 434 aaPredicted RBP19.82■□□□□ 0.76
UPF1-207ENST00000599848 OR10G2Q8NGC3 310 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 GAL3ST3Q96A11 431 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 CCRL2O00421 344 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 SOX1O00570 391 aaPredicted RBP19.82■□□□□ 0.76
UPF1-207ENST00000599848 HCKP08631 526 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 CDK6Q00534 326 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 NCBP2-AS2Q69YL0 99 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 HLA-CQ95604 372 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 TRIM36Q9NQ86 728 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 MANBAO00462 879 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 SOX9P48436 509 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 ARPC4P59998 168 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 PKDCCQ504Y2 493 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 EIF5AL1Q6IS14 154 aaKnown RBP19.81■□□□□ 0.76
UPF1-207ENST00000599848 GHDCQ8N2G8 530 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 TXNDC5Q8NBS9 432 aaKnown RBP19.81■□□□□ 0.76
UPF1-207ENST00000599848 TNFRSF10DQ9UBN6 386 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 EFCAB9A8MZ26 197 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 PIRO00625 290 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 ELF3P78545 371 aaPredicted RBP19.81■□□□□ 0.76
UPF1-207ENST00000599848 ALG10BQ5I7T1 473 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 NKD1Q969G9 470 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 SAP18O00422 153 aaKnown RBP19.81■□□□□ 0.76
UPF1-207ENST00000599848 PAK4O96013 591 aaPredicted RBP19.81■□□□□ 0.76
UPF1-207ENST00000599848 HNRNPA2B1P22626 353 aaKnown RBP19.81■□□□□ 0.76
UPF1-207ENST00000599848 OR52E8Q6IFG1 317 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 FAM47BQ8NA70 645 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 ANKRA2Q9H9E1 313 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 LMAN1LQ9HAT1 526 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 NGBQ9NPG2 151 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 PFDN2Q9UHV9 154 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 C9IYK1 514 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 CD48P09326 243 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 HK1P19367 917 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 ITIH1P19827 911 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 ADARP55265 1226 aaKnown RBP19.81■□□□□ 0.76
UPF1-207ENST00000599848 PPM1JQ5JR12 505 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 GRHL2Q6ISB3 625 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 ABHD12BQ7Z5M8 362 aaPredicted RBP19.81■□□□□ 0.76
UPF1-207ENST00000599848 MAP3K3Q99759 626 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 IL21RQ9HBE5 538 aa19.81■□□□□ 0.76
UPF1-207ENST00000599848 PRAMEF26H0Y7S4 382 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 ZNF763Q0D2J5 394 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 MFSD13AQ14CX5 517 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 UPP1Q16831 310 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 B3GNT4Q9C0J1 378 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 C10orf71Q711Q0 1435 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 AQP12BA6NM10 295 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 RRP8O43159 456 aaKnown RBP19.8■□□□□ 0.76
UPF1-207ENST00000599848 CCNOP22674 350 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 STC1P52823 247 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 MAD2L1BPQ15013 274 aaPredicted RBP19.8■□□□□ 0.76
UPF1-207ENST00000599848 AQP12AQ8IXF9 295 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 CSNK1A1LQ8N752 337 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 DNAAF1Q8NEP3 725 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 C14orf166Q9Y224 244 aaKnown RBP19.8■□□□□ 0.76
UPF1-207ENST00000599848 PSMD9O00233 223 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 GPR143P51810 404 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 BNIP1Q12981 228 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 CILP2Q8IUL8 1156 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 DCBLD1Q8N8Z6 715 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 CYTH4Q9UIA0 394 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 PPM1HQ9ULR3 514 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 COMMD3-BMI1R4GMX3 469 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 OR6C74A6NCV1 312 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 FAM170BA6NMN3 283 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 PEPDP12955 493 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 EDNRAP25101 427 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 ABRAXAS2Q15018 415 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 ASB15Q8WXK1 588 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 PKP4Q99569 1192 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 SMOQ99835 787 aa19.8■□□□□ 0.76
UPF1-207ENST00000599848 ADAM18Q9Y3Q7 739 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms