RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 C17orf62Q9BQA9 187 aa18.51■□□□□ 0.55
SHKBP1-221ENST00000599833 TMEM109Q9BVC6 243 aa18.51■□□□□ 0.55
SHKBP1-221ENST00000599833 RHBGQ9H310 441 aa18.51■□□□□ 0.55
SHKBP1-221ENST00000599833 WDR54Q9H977 334 aa18.51■□□□□ 0.55
SHKBP1-221ENST00000599833 OPTCQ9UBM4 332 aa18.51■□□□□ 0.55
SHKBP1-221ENST00000599833 PCTPQ9UKL6 214 aa18.51■□□□□ 0.55
SHKBP1-221ENST00000599833 SLC22A7Q9Y694 548 aa18.51■□□□□ 0.55
SHKBP1-221ENST00000599833 A0A1B0GTL3 188 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 C9J4A7 227 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 OR7A17O14581 309 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 FFAR3O14843 346 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 GPR42O15529 346 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 B3GALT4O96024 378 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 GSTA1P08263 222 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 IL1RNP18510 177 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 MAT1AQ00266 395 aaKnown RBP18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 MC1RQ01726 317 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 RHDQ02161 417 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 SYT16Q17RD7 645 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 XKR6Q5GH73 641 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 TMIGD1Q6UXZ0 262 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 CNPY4Q8N129 248 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 TEX9Q8N6V9 391 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 UTP15Q8TED0 518 aaKnown RBP18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 PHF21BQ96EK2 531 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 SCYL1Q96KG9 808 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 MESP1Q9BRJ9 268 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 EFCAB11Q9BUY7 163 aa18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 PITHD1Q9GZP4 211 aaPredicted RBP18.5■□□□□ 0.55
SHKBP1-221ENST00000599833 CDC14CA4D256 554 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 H0YIG0 161 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 ERVH48-1M5A8F1 160 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 CLGNO14967 610 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 DLX3O60479 287 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 SERPINA6P08185 405 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 SLC35G6P0C7Q6 338 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 EEF1DP29692 281 aaKnown RBP18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 HNRNPH1P31943 449 aaKnown RBP18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 GTF2H2Q13888 395 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 RBBP5Q15291 538 aaKnown RBP18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 ADPRMQ3LIE5 342 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 VWA2Q5GFL6 755 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 GRHL2Q6ISB3 625 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 GTF2H2CQ6P1K8 395 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 RPS27LQ71UM5 84 aaKnown RBP18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 PPP1R32Q7Z5V6 425 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 TRABD2AQ86V40 505 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 LAS2Q8IYD9 372 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 IQCKQ8N0W5 287 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 RIBC1Q8N443 379 aaPredicted RBP18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 ZCCHC10Q8TBK6 192 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 ZNF483Q8TF39 744 aaPredicted RBP18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 TGIF2Q9GZN2 237 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 C12orf65Q9H3J6 166 aaKnown RBP18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 TMCO1Q9UM00 188 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 PTRH2Q9Y3E5 179 aaKnown RBP18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 KCNMB2Q9Y691 235 aa18.49■□□□□ 0.55
SHKBP1-221ENST00000599833 G3V2L1 256 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 SGK494L7N484 410 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 GALR3O60755 368 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 PROCP04070 461 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 ZGLP1P0C6A0 271 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 ATXN8OSP0DMR3 200 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 EPB42P16452 691 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 FBLP22087 321 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 CXCR2P25025 360 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 TRAF3Q13114 568 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 FAM219BQ5XKK7 198 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 LAPTM4BQ86VI4 370 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 ZC3H7AQ8IWR0 971 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 EXD3Q8N9H8 876 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 L3MBTL4Q8NA19 623 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 TRPV3Q8NET8 790 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 OR52B6Q8NGF0 335 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 STT3BQ8TCJ2 826 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 COL26A1Q96A83 441 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 MMABQ96EY8 250 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 SEC16BQ96JE7 1060 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 CATSPER2Q96P56 530 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 ROPN1BQ9BZX4 212 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 ROPN1Q9HAT0 212 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 MKS1Q9NXB0 559 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 ZNF225Q9UK10 706 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 CDC14AQ9UNH5 594 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 PLAAQ9Y263 795 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 MAP4K5Q9Y4K4 846 aa18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 TNPO3Q9Y5L0 923 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-221ENST00000599833 LRIT2A6NDA9 550 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 PPP6CO00743 305 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 CLEC3AO75596 197 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 KLHL18O94889 574 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 TUBBP07437 444 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 ZNF888P0CJ79 500 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 PIM1P11309 404 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 GSTM2P28161 218 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 CRHR1P34998 444 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 IRF8Q02556 426 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 KLC1Q07866 573 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 ZNF844Q08AG5 666 aa18.47■□□□□ 0.55
SHKBP1-221ENST00000599833 SSPNQ14714 243 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms