RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 NAALAD2Q9Y3Q0 740 aa11.71□□□□□ -0.53
SS18-225ENST00000585121 COPG1Q9Y678 874 aaKnown RBP11.71□□□□□ -0.53
SS18-225ENST00000585121 SPENQ96T58 3664 aaKnown RBP11.71□□□□□ -0.53
SS18-225ENST00000585121 PCSK5Q92824 1860 aa11.71□□□□□ -0.54
SS18-225ENST00000585121 A0A1W2PQ72 361 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 DYTNA2CJ06 578 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 PHGDHO43175 533 aaKnown RBP11.7□□□□□ -0.54
SS18-225ENST00000585121 RDH16O75452 317 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 WDR47O94967 919 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 PRR35P0CG20 571 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 ALOX12P18054 663 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 SCTRP47872 440 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 AGTR2P50052 363 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 GPX6P59796 221 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 RAB10P61026 200 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 REEP5Q00765 189 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 Q0VFX4 171 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 TGFBIQ15582 683 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 CRB2Q5IJ48 1285 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 CDKL4Q5MAI5 379 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 IGFL2Q6UWQ7 119 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 LINC00696Q6ZRV3 163 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 PRSS41Q7RTY9 318 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 FAM26EQ8N5C1 309 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 CISD2Q8N5K1 135 aaKnown RBP11.7□□□□□ -0.54
SS18-225ENST00000585121 MNS1Q8NEH6 495 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 TTLQ8NG68 377 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 NT5CQ8TCD5 201 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 FBF1Q8TES7 1133 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 RHBDF1Q96CC6 855 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 CNDP1Q96KN2 507 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 CYTH2Q99418 400 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 UNKQ9C0B0 810 aaKnown RBP11.7□□□□□ -0.54
SS18-225ENST00000585121 VN1R1Q9GZP7 353 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 ZBTB20Q9HC78 741 aaPredicted RBP11.7□□□□□ -0.54
SS18-225ENST00000585121 LRRC4CQ9HCJ2 640 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 WWOXQ9NZC7 414 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 CD274Q9NZQ7 290 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 MDC1Q14676 2089 aaKnown RBP11.7□□□□□ -0.54
SS18-225ENST00000585121 LOC102723996A0A087X1L8 192 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 JRKO75564 520 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 GNLYP22749 145 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 CRABP2P29373 138 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 PHBP35232 272 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 SLC7A5Q01650 507 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 ACTN3Q08043 901 aaPredicted RBP11.7□□□□□ -0.54
SS18-225ENST00000585121 MFAP5Q13361 173 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 SLMAPQ14BN4 828 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 TLR1Q15399 786 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 KBTBD12Q3ZCT8 623 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 FHL5Q5TD97 284 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 SULT1C3Q6IMI6 304 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 ZDHHC24Q6UX98 284 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 CPEB2Q7Z5Q1 589 aaKnown RBP11.7□□□□□ -0.54
SS18-225ENST00000585121 TBC1D1Q86TI0 1168 aaPredicted RBP11.7□□□□□ -0.54
SS18-225ENST00000585121 KRT78Q8N1N4 520 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 SPATA6LQ8N4H0 392 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 AFAP1L2Q8N4X5 818 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 ZNF740Q8NDX6 193 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 SNRNP40Q96DI7 357 aaKnown RBP11.7□□□□□ -0.54
SS18-225ENST00000585121 OR1F2PQ96R84 312 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 MESP1Q9BRJ9 268 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 TSPYL1Q9H0U9 437 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 L2HGDHQ9H9P8 463 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 CLK4Q9HAZ1 481 aaKnown RBP11.7□□□□□ -0.54
SS18-225ENST00000585121 AGPAT4Q9NRZ5 378 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 PTGFRNQ9P2B2 879 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 MTRF1LQ9UGC7 380 aaKnown RBP11.7□□□□□ -0.54
SS18-225ENST00000585121 TEKT2Q9UIF3 430 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 RNF112Q9ULX5 631 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 CNTRLQ7Z7A1 2325 aa11.7□□□□□ -0.54
SS18-225ENST00000585121 LRRK2Q5S007 2527 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 ESYT3A0FGR9 886 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 ZNF860A6NHJ4 632 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 PSMD12O00232 456 aaPredicted RBP11.69□□□□□ -0.54
SS18-225ENST00000585121 CLGNO14967 610 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 GALR3O60755 368 aaPredicted RBP11.69□□□□□ -0.54
SS18-225ENST00000585121 SERPINA6P08185 405 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 ZNF888P0CJ79 500 aaPredicted RBP11.69□□□□□ -0.54
SS18-225ENST00000585121 C1GALT1C1LP0DN25 315 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 MYBL2P10244 700 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 CD1DP15813 335 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 JAK1P23458 1154 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 HPDP32754 393 aaPredicted RBP11.69□□□□□ -0.54
SS18-225ENST00000585121 GDF5P43026 501 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 STXBP1P61764 594 aaKnown RBP11.69□□□□□ -0.54
SS18-225ENST00000585121 ARG2P78540 354 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 GUCY2DQ02846 1103 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 CDC16Q13042 620 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 ELOAQ14241 798 aaKnown RBP11.69□□□□□ -0.54
SS18-225ENST00000585121 ZNF169Q14929 603 aaPredicted RBP11.69□□□□□ -0.54
SS18-225ENST00000585121 PCOLCEQ15113 449 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 TRADDQ15628 312 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 DEFB134Q4QY38 66 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 PRR30Q53SZ7 412 aaPredicted RBP11.69□□□□□ -0.54
SS18-225ENST00000585121 CCDC91Q7Z6B0 441 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 CUZD1Q86UP6 607 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 PDSS2Q86YH6 399 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 KLHDC8AQ8IYD2 350 aa11.69□□□□□ -0.54
SS18-225ENST00000585121 SNX31Q8N9S9 440 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms