RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 NMRAL1Q9HBL8 299 aa22.62■■□□□ 1.21
SHMT1-206ENST00000579558 ZNF160Q9HCG1 818 aa22.62■■□□□ 1.21
SHMT1-206ENST00000579558 PCDH17O14917 1159 aa22.61■■□□□ 1.21
SHMT1-206ENST00000579558 JRKO75564 520 aa22.61■■□□□ 1.21
SHMT1-206ENST00000579558 LTA4HP09960 611 aaKnown RBP22.61■■□□□ 1.21
SHMT1-206ENST00000579558 C1GALT1C1LP0DN25 315 aa22.61■■□□□ 1.21
SHMT1-206ENST00000579558 TFEBP19484 476 aa22.61■■□□□ 1.21
SHMT1-206ENST00000579558 GGT5P36269 586 aa22.61■■□□□ 1.21
SHMT1-206ENST00000579558 XCR1P46094 333 aa22.61■■□□□ 1.21
SHMT1-206ENST00000579558 HSPA7P48741 367 aa22.61■■□□□ 1.21
SHMT1-206ENST00000579558 MLLT10P55197 1068 aa22.61■■□□□ 1.21
SHMT1-206ENST00000579558 EEF1A2Q05639 463 aaKnown RBP22.61■■□□□ 1.21
SHMT1-206ENST00000579558 DLG1Q12959 904 aa22.61■■□□□ 1.21
SHMT1-206ENST00000579558 FBXO48Q5FWF7 155 aa22.61■■□□□ 1.21
SHMT1-206ENST00000579558 MFSD4BQ5TF39 518 aa22.61■■□□□ 1.21
SHMT1-206ENST00000579558 SLCO4C1Q6ZQN7 724 aa22.61■■□□□ 1.21
SHMT1-206ENST00000579558 ANKRD53Q8N9V6 530 aa22.61■■□□□ 1.21
SHMT1-206ENST00000579558 PDPRQ8NCN5 879 aa22.61■■□□□ 1.21
SHMT1-206ENST00000579558 STAG3L4Q8TBR4 150 aa22.61■■□□□ 1.21
SHMT1-206ENST00000579558 LHPPQ9H008 270 aa22.61■■□□□ 1.21
SHMT1-206ENST00000579558 CLMPQ9H6B4 373 aa22.61■■□□□ 1.21
SHMT1-206ENST00000579558 DNAJC11Q9NVH1 559 aa22.61■■□□□ 1.21
SHMT1-206ENST00000579558 NSG1A0A0A6YYJ2 146 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 ZNF860A6NHJ4 632 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 TTLL8A6PVC2 850 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 H2AFYO75367 372 aaKnown RBP22.6■■□□□ 1.21
SHMT1-206ENST00000579558 ACSL3O95573 720 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 COX6A1P12074 109 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 ALOX12P18054 663 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 ECHS1P30084 290 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 FOXK1P85037 733 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 IGFBP7Q16270 282 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 MINDY4Q4G0A6 757 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 SLC6A19Q695T7 634 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 JMJD6Q6NYC1 403 aaPredicted RBP22.6■■□□□ 1.21
SHMT1-206ENST00000579558 NDUFAF7Q7L592 441 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 SHISA5Q8N114 240 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 AFAP1L2Q8N4X5 818 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 TRPV3Q8NET8 790 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 TM9SF4Q92544 642 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 ESAMQ96AP7 390 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 THOC3Q96J01 351 aaKnown RBP22.6■■□□□ 1.21
SHMT1-206ENST00000579558 CAPS2Q9BXY5 557 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 VN1R1Q9GZP7 353 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 IGSF5Q9NSI5 407 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 GPRC5BQ9NZH0 403 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 LUZP4Q9P127 313 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 ACOT9Q9Y305 439 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 DOCK10Q96BY6 2186 aa22.6■■□□□ 1.21
SHMT1-206ENST00000579558 A0A087X1B8 175 aa22.59■■□□□ 1.21
SHMT1-206ENST00000579558 STK16O75716 305 aa22.59■■□□□ 1.21
SHMT1-206ENST00000579558 ZNF888P0CJ79 500 aaPredicted RBP22.59■■□□□ 1.21
SHMT1-206ENST00000579558 EFNA3P52797 238 aa22.59■■□□□ 1.21
SHMT1-206ENST00000579558 SKP1P63208 163 aa22.59■■□□□ 1.21
SHMT1-206ENST00000579558 Q0VFX4 171 aa22.59■■□□□ 1.21
SHMT1-206ENST00000579558 SLBPQ14493 270 aaKnown RBP eCLIP22.59■■□□□ 1.21
SHMT1-206ENST00000579558 ABHD13Q7L211 337 aa22.59■■□□□ 1.21
SHMT1-206ENST00000579558 CCDC91Q7Z6B0 441 aa22.59■■□□□ 1.21
SHMT1-206ENST00000579558 ISCA2Q86U28 154 aa22.59■■□□□ 1.21
SHMT1-206ENST00000579558 SNX31Q8N9S9 440 aa22.59■■□□□ 1.21
SHMT1-206ENST00000579558 METTL21AQ8WXB1 218 aa22.59■■□□□ 1.21
SHMT1-206ENST00000579558 SNX15Q9NRS6 342 aa22.59■■□□□ 1.21
SHMT1-206ENST00000579558 NUDT4Q9NZJ9 180 aa22.59■■□□□ 1.21
SHMT1-206ENST00000579558 PTBP2Q9UKA9 531 aaKnown RBP22.59■■□□□ 1.21
SHMT1-206ENST00000579558 LOC102723996A0A087X1L8 192 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 IGHV1-45A0A0A0MS14 117 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 A0A1W2PQ72 361 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 HMX2A2RU54 273 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 URADA6NGE7 173 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 SUPT3HB4E1H0 165 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 CLGNO14967 610 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 GALR3O60755 368 aaPredicted RBP22.58■■□□□ 1.21
SHMT1-206ENST00000579558 SUPT3HO75486 399 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 SORBS2O94875 1100 aaKnown RBP22.58■■□□□ 1.21
SHMT1-206ENST00000579558 C8orf89P0DMQ9 161 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 HNF4AP41235 474 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 KCNC1P48547 511 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 CD97P48960 835 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 DEFB134Q4QY38 66 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 AGAP7PQ5VUJ5 663 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 NIPAL1Q6NVV3 410 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 TMEM205Q6UW68 189 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 IGFL3Q6UXB1 125 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP22.58■■□□□ 1.21
SHMT1-206ENST00000579558 KRT78Q8N1N4 520 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 OR5T3Q8NGG3 340 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 KCTD4Q8WVF5 259 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 PNPLA2Q96AD5 504 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 NXNL1Q96CM4 212 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 AGAP4Q96P64 663 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 FUT8Q9BYC5 575 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 SLC6A16Q9GZN6 736 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 ZBTB20Q9HC78 741 aaPredicted RBP22.58■■□□□ 1.21
SHMT1-206ENST00000579558 SLAMF7Q9NQ25 335 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 RIC8BQ9NVN3 520 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 PLAAQ9Y263 795 aa22.58■■□□□ 1.21
SHMT1-206ENST00000579558 CCNT2O60583 730 aaKnown RBP22.57■■□□□ 1.2
SHMT1-206ENST00000579558 KERAO60938 352 aa22.57■■□□□ 1.2
SHMT1-206ENST00000579558 B3GALT4O96024 378 aa22.57■■□□□ 1.2
SHMT1-206ENST00000579558 C2P06681 752 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms