RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ARMC2Q8NEN0 867 aa18.58■□□□□ 0.57
CLN3-225ENST00000566824 OR9A4Q8NGU2 314 aa18.58■□□□□ 0.57
CLN3-225ENST00000566824 EFCAB11Q9BUY7 163 aa18.58■□□□□ 0.57
CLN3-225ENST00000566824 ERVK-6Q9BXR3 956 aa18.58■□□□□ 0.57
CLN3-225ENST00000566824 ACTL8Q9H568 366 aa18.58■□□□□ 0.57
CLN3-225ENST00000566824 TYROBPO43914 113 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 ONECUT2O95948 504 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 FURINP09958 794 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 MYL2P10916 166 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 IL1RNP18510 177 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 IMPDH1P20839 514 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 HNRNPH1P31943 449 aaKnown RBP18.57■□□□□ 0.56
CLN3-225ENST00000566824 CCR10P46092 362 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 PIK3CGP48736 1102 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 CXADRP78310 365 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 PWP1Q13610 501 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 SYT16Q17RD7 645 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 CCDC153Q494R4 210 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 ARHGAP40Q5TG30 622 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 GARNL3Q5VVW2 1013 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 BROXQ5VW32 411 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 GRHL2Q6ISB3 625 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 MRPL14Q6P1L8 145 aaKnown RBP18.57■□□□□ 0.56
CLN3-225ENST00000566824 METTL2BQ6P1Q9 378 aaKnown RBP18.57■□□□□ 0.56
CLN3-225ENST00000566824 KRT78Q8N1N4 520 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 TBC1D19Q8N5T2 526 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 AMER3Q8N944 861 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 TCP10LQ8TDR4 215 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 KIAA1143Q96AT1 154 aaPredicted RBP18.57■□□□□ 0.56
CLN3-225ENST00000566824 SLC6A16Q9GZN6 736 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 ACTR8Q9H981 624 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 IFT80Q9P2H3 777 aaPredicted RBP18.57■□□□□ 0.56
CLN3-225ENST00000566824 CTSFQ9UBX1 484 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 ZNF225Q9UK10 706 aa18.57■□□□□ 0.56
CLN3-225ENST00000566824 FARSAQ9Y285 508 aaKnown RBP18.57■□□□□ 0.56
CLN3-225ENST00000566824 C21orf140B9A014 251 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 SGK494L7N484 410 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 TXNDC9O14530 226 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 KLF7O75840 302 aaPredicted RBP18.56■□□□□ 0.56
CLN3-225ENST00000566824 ZNF888P0CJ79 500 aaPredicted RBP18.56■□□□□ 0.56
CLN3-225ENST00000566824 CPA3P15088 417 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 AGXTP21549 392 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 CXCR2P25025 360 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 PTPN4P29074 926 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 TMPRSS3P57727 454 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 MAT1AQ00266 395 aaKnown RBP18.56■□□□□ 0.56
CLN3-225ENST00000566824 IL10RAQ13651 578 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 PCLAFQ15004 111 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 NCF4Q15080 339 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 TOR1AIP1Q5JTV8 583 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 MYLK4Q86YV6 388 aaPredicted RBP18.56■□□□□ 0.56
CLN3-225ENST00000566824 LAS2Q8IYD9 372 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 AFAP1L2Q8N4X5 818 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 L3MBTL4Q8NA19 623 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 OR7G3Q8NG95 312 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 UTP15Q8TED0 518 aaKnown RBP18.56■□□□□ 0.56
CLN3-225ENST00000566824 TRPC4APQ8TEL6 797 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 STARD8Q92502 1023 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 L3HYPDHQ96EM0 354 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 MMABQ96EY8 250 aaPredicted RBP18.56■□□□□ 0.56
CLN3-225ENST00000566824 SLC45A3Q96JT2 553 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 FAM111AQ96PZ2 611 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 DPH2Q9BQC3 489 aaPredicted RBP18.56■□□□□ 0.56
CLN3-225ENST00000566824 NLNQ9BYT8 704 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 DRC3Q9H069 523 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 RHBGQ9H310 441 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 GSTO2Q9H4Y5 243 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 ZNF304Q9HCX3 659 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 PCDHGA6Q9Y5G7 932 aa18.56■□□□□ 0.56
CLN3-225ENST00000566824 A0A0G2JN53 185 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 ZNF860A6NHJ4 632 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 K7ENP7 123 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 AGPSO00116 658 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 SH3BGRLO75368 114 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 SUPT7LO94864 414 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 RAB40ALP0C0E4 278 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 SLC35G6P0C7Q6 338 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 PCNAP12004 261 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 RAB8AP61006 207 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 CLCQ05315 142 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 VAC14Q08AM6 782 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 LAPTM5Q13571 262 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 MPP2Q14168 576 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 CPSF6Q16630 551 aaKnown RBP eCLIP18.55■□□□□ 0.56
CLN3-225ENST00000566824 INO80CQ6PI98 192 aaPredicted RBP18.55■□□□□ 0.56
CLN3-225ENST00000566824 SHISA6Q6ZSJ9 500 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 OVCH1Q7RTY7 1134 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 C10orf107Q8IVU9 208 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 CCDC63Q8NA47 563 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 TRPV3Q8NET8 790 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 OR4F6Q8NGB9 312 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 ZNF473Q8WTR7 871 aaKnown RBP18.55■□□□□ 0.56
CLN3-225ENST00000566824 CCT6BQ92526 530 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 COL26A1Q96A83 441 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 PGM2Q96G03 612 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 SMC6Q96SB8 1091 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 MECRQ9BV79 373 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 PRORYQ9H606 182 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 NAALAD2Q9Y3Q0 740 aa18.55■□□□□ 0.56
CLN3-225ENST00000566824 LOC400499M0QZD8 3231 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms