RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 USP53Q70EK8 1073 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 ABHD13Q7L211 337 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 VN1R5Q7Z5H4 357 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 MTDHQ86UE4 582 aaKnown RBP12.25□□□□□ -0.45
CLK3-214ENST00000564096 CSNK1A1LQ8N752 337 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 NT5CQ8TCD5 201 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 GAL3ST3Q96A11 431 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 ERP27Q96DN0 273 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 PPM1MQ96MI6 270 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 CATSPER2Q96P56 530 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 OR2A5Q96R48 311 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 C1orf50Q9BV19 199 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 ROGDIQ9GZN7 287 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 NMUR2Q9GZQ4 415 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 REXO4Q9GZR2 422 aaKnown RBP12.25□□□□□ -0.45
CLK3-214ENST00000564096 COPS7BQ9H9Q2 264 aaPredicted RBP12.25□□□□□ -0.45
CLK3-214ENST00000564096 IRAK4Q9NWZ3 460 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 PILRAQ9UKJ1 303 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 PLCL2Q9UPR0 1127 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 CCL27Q9Y4X3 112 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 CAPN7Q9Y6W3 813 aa12.25□□□□□ -0.45
CLK3-214ENST00000564096 A0A1W2PQM1 296 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 KIF1CO43896 1103 aaKnown RBP12.24□□□□□ -0.45
CLK3-214ENST00000564096 SRPX2O60687 465 aaPredicted RBP12.24□□□□□ -0.45
CLK3-214ENST00000564096 CTSVO60911 334 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 RFPL3O75679 317 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 TGFB1P01137 390 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 CDK4P11802 303 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 PRPS2P11908 318 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 HOXB3P14651 431 aaPredicted RBP12.24□□□□□ -0.45
CLK3-214ENST00000564096 ADSLP30566 484 aaPredicted RBP12.24□□□□□ -0.45
CLK3-214ENST00000564096 TIA1P31483 386 aaKnown RBP eCLIP12.24□□□□□ -0.45
CLK3-214ENST00000564096 SSR2P43308 183 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 TSFMP43897 325 aaKnown RBP12.24□□□□□ -0.45
CLK3-214ENST00000564096 GSTM5P46439 218 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 E2F1Q01094 437 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 TRA2AQ13595 282 aaKnown RBP eCLIP12.24□□□□□ -0.45
CLK3-214ENST00000564096 MAPRE2Q15555 327 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 ZIC1Q15915 447 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 TOR1AIP1Q5JTV8 583 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 STPG1Q5TH74 334 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 FAM219BQ5XKK7 198 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 NIPAL1Q6NVV3 410 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 TRPM8Q7Z2W7 1104 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 VN1R4Q7Z5H5 301 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 MIER2Q8N344 545 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 TTC29Q8NA56 475 aaPredicted RBP12.24□□□□□ -0.45
CLK3-214ENST00000564096 CREB3L4Q8TEY5 395 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 STARD8Q92502 1023 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 RGMAQ96B86 450 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 SLC41A2Q96JW4 573 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 KCNC2Q96PR1 638 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 OR51B5Q9H339 312 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 RXFP3Q9NSD7 469 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 AIG1Q9NVV5 245 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 SEMA5BQ9P283 1151 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 ATXN7L1Q9ULK2 861 aaPredicted RBP12.24□□□□□ -0.45
CLK3-214ENST00000564096 MAPRE3Q9UPY8 281 aa12.24□□□□□ -0.45
CLK3-214ENST00000564096 GPR179Q6PRD1 2367 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 KNL1Q8NG31 2342 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 IGHV5-51A0A0C4DH38 117 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 GNG14A0A1W2PPG7 69 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 H0YGG7 62 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 NTN3O00634 580 aaPredicted RBP12.23□□□□□ -0.45
CLK3-214ENST00000564096 ERI3O43414 337 aaKnown RBP12.23□□□□□ -0.45
CLK3-214ENST00000564096 PCDH7O60245 1069 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 LCMT2O60294 686 aaKnown RBP12.23□□□□□ -0.45
CLK3-214ENST00000564096 CBFA2T3O75081 653 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 ETHE1O95571 254 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 EIF2S1P05198 315 aaKnown RBP12.23□□□□□ -0.45
CLK3-214ENST00000564096 MSL3P1P0C860 447 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 NELFEP18615 380 aaKnown RBP12.23□□□□□ -0.45
CLK3-214ENST00000564096 MRPL19P49406 292 aaKnown RBP12.23□□□□□ -0.45
CLK3-214ENST00000564096 LIMK1P53667 647 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 ARF3P61204 181 aaPredicted RBP12.23□□□□□ -0.45
CLK3-214ENST00000564096 ACY1Q03154 408 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 ZNF763Q0D2J5 394 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 NDUFA9Q16795 377 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 DEFB110Q30KQ9 67 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 ADPRMQ3LIE5 342 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 PDCD4Q53EL6 469 aaKnown RBP12.23□□□□□ -0.45
CLK3-214ENST00000564096 DEPDC1Q5TB30 811 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 IL23RQ5VWK5 629 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 FAM91A1Q658Y4 838 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 TMEM198Q66K66 360 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 RBM44Q6ZP01 1051 aaKnown RBP12.23□□□□□ -0.45
CLK3-214ENST00000564096 COMMD6Q7Z4G1 85 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 CLNKQ7Z7G1 428 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 MCATQ8IVS2 390 aaKnown RBP12.23□□□□□ -0.45
CLK3-214ENST00000564096 METTL4Q8N3J2 472 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 D2HGDHQ8N465 521 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 RNF175Q8N4F7 328 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 C1orf52Q8N6N3 182 aaKnown RBP12.23□□□□□ -0.45
CLK3-214ENST00000564096 OR2L5Q8NG80 312 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 APIPQ96GX9 242 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 MARK4Q96L34 752 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 CCDC74BQ96LY2 380 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 TMEM74Q96NL1 305 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 FCRL4Q96PJ5 515 aa12.23□□□□□ -0.45
CLK3-214ENST00000564096 ZBTB18Q99592 522 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms