RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 SCTRP47872 440 aa15.92■□□□□ 0.14
CLK3-210ENST00000563112 SNRPNP63162 240 aaKnown RBP15.92■□□□□ 0.14
CLK3-210ENST00000563112 ARG2P78540 354 aa15.92■□□□□ 0.14
CLK3-210ENST00000563112 CDC16Q13042 620 aa15.92■□□□□ 0.14
CLK3-210ENST00000563112 USP10Q14694 798 aaKnown RBP15.92■□□□□ 0.14
CLK3-210ENST00000563112 PCOLCEQ15113 449 aa15.92■□□□□ 0.14
CLK3-210ENST00000563112 NR6A1Q15406 480 aa15.92■□□□□ 0.14
CLK3-210ENST00000563112 TSNQ15631 228 aaKnown RBP15.92■□□□□ 0.14
CLK3-210ENST00000563112 B3GNTL1Q67FW5 361 aaPredicted RBP15.92■□□□□ 0.14
CLK3-210ENST00000563112 NXPE4Q6UWF7 544 aa15.92■□□□□ 0.14
CLK3-210ENST00000563112 ABHD13Q7L211 337 aa15.92■□□□□ 0.14
CLK3-210ENST00000563112 CPEB2Q7Z5Q1 589 aaKnown RBP15.92■□□□□ 0.14
CLK3-210ENST00000563112 CCDC25Q86WR0 208 aa15.92■□□□□ 0.14
CLK3-210ENST00000563112 CEP97Q8IW35 865 aa15.92■□□□□ 0.14
CLK3-210ENST00000563112 TRPV3Q8NET8 790 aa15.92■□□□□ 0.14
CLK3-210ENST00000563112 ANKRD49Q8WVL7 239 aa15.92■□□□□ 0.14
CLK3-210ENST00000563112 MCMBPQ9BTE3 642 aa15.92■□□□□ 0.14
CLK3-210ENST00000563112 PHACTR1Q9C0D0 580 aa15.92■□□□□ 0.14
CLK3-210ENST00000563112 DERL2Q9GZP9 239 aa15.92■□□□□ 0.14
CLK3-210ENST00000563112 LRRC4CQ9HCJ2 640 aa15.92■□□□□ 0.14
CLK3-210ENST00000563112 MTO1Q9Y2Z2 717 aaKnown RBP15.92■□□□□ 0.14
CLK3-210ENST00000563112 CSAG2Q9Y5P2 127 aa15.92■□□□□ 0.14
CLK3-210ENST00000563112 MAST4O15021 2626 aa15.92■□□□□ 0.14
CLK3-210ENST00000563112 SPENQ96T58 3664 aaKnown RBP15.91■□□□□ 0.14
CLK3-210ENST00000563112 TCRBV9S1A1TA0A576 114 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 H2AFYO75367 372 aaKnown RBP15.91■□□□□ 0.14
CLK3-210ENST00000563112 PIAS1O75925 651 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 STMN1P16949 149 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 GP5P40197 560 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 AGTR2P50052 363 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 REEP5Q00765 189 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 CKAP4Q07065 602 aaKnown RBP15.91■□□□□ 0.14
CLK3-210ENST00000563112 MRPL49Q13405 166 aaKnown RBP15.91■□□□□ 0.14
CLK3-210ENST00000563112 RBBP5Q15291 538 aaKnown RBP15.91■□□□□ 0.14
CLK3-210ENST00000563112 EIF2S3LQ2VIR3 472 aaKnown RBP15.91■□□□□ 0.14
CLK3-210ENST00000563112 TMPRSS11BQ86T26 416 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 PDSS2Q86YH6 399 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 CTAGE3PQ8IX95 158 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 AFAP1L2Q8N4X5 818 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 SIRT6Q8N6T7 355 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 ZNF740Q8NDX6 193 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 PRR7Q8TB68 274 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 NT5CQ8TCD5 201 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 PSMF1Q92530 271 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 MOCOSQ96EN8 888 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 IMMP1LQ96LU5 166 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 OR1F2PQ96R84 312 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 RBBP8Q99708 897 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 CAB39LQ9H9S4 337 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 RELNP78509 3460 aa15.91■□□□□ 0.14
CLK3-210ENST00000563112 UTP20O75691 2785 aaKnown RBP15.9■□□□□ 0.14
CLK3-210ENST00000563112 ZNF860A6NHJ4 632 aa15.9■□□□□ 0.14
CLK3-210ENST00000563112 FAM159BA6NKW6 160 aa15.9■□□□□ 0.14
CLK3-210ENST00000563112 CXorf49A8MYA2 514 aaPredicted RBP15.9■□□□□ 0.14
CLK3-210ENST00000563112 GALR3O60755 368 aaPredicted RBP15.9■□□□□ 0.14
CLK3-210ENST00000563112 WDR47O94967 919 aa15.9■□□□□ 0.14
CLK3-210ENST00000563112 CCDC166P0CW27 439 aa15.9■□□□□ 0.14
CLK3-210ENST00000563112 GNAZP19086 355 aa15.9■□□□□ 0.14
CLK3-210ENST00000563112 SPRP35270 261 aaPredicted RBP15.9■□□□□ 0.14
CLK3-210ENST00000563112 SOX11P35716 441 aa15.9■□□□□ 0.14
CLK3-210ENST00000563112 ATP6V0D1P61421 351 aa15.9■□□□□ 0.14
CLK3-210ENST00000563112 ACTN3Q08043 901 aaPredicted RBP15.9■□□□□ 0.14
CLK3-210ENST00000563112 DEFB134Q4QY38 66 aa15.9■□□□□ 0.14
CLK3-210ENST00000563112 GRTP1Q5TC63 336 aa15.9■□□□□ 0.14
CLK3-210ENST00000563112 TCAIMQ8N3R3 496 aa15.9■□□□□ 0.14
CLK3-210ENST00000563112 OR1N1Q8NGS0 311 aa15.9■□□□□ 0.14
CLK3-210ENST00000563112 PEX11GQ96HA9 241 aa15.9■□□□□ 0.14
CLK3-210ENST00000563112 CAPS2Q9BXY5 557 aa15.9■□□□□ 0.14
CLK3-210ENST00000563112 SPNS1Q9H2V7 528 aa15.9■□□□□ 0.14
CLK3-210ENST00000563112 CNOT10Q9H9A5 744 aaKnown RBP15.9■□□□□ 0.14
CLK3-210ENST00000563112 CLK4Q9HAZ1 481 aaKnown RBP15.9■□□□□ 0.14
CLK3-210ENST00000563112 TEKT2Q9UIF3 430 aa15.9■□□□□ 0.14
CLK3-210ENST00000563112 NAV2Q8IVL1 2488 aa15.9■□□□□ 0.14
CLK3-210ENST00000563112 TRAV17A0A0B4J275 112 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 BLACEA4D250 179 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 ANKUB1A6NFN9 424 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 NCF1BA6NI72 391 aaPredicted RBP15.89■□□□□ 0.13
CLK3-210ENST00000563112 NCF1CA8MVU1 366 aaPredicted RBP15.89■□□□□ 0.13
CLK3-210ENST00000563112 PHGDHO43175 533 aaKnown RBP15.89■□□□□ 0.13
CLK3-210ENST00000563112 SEC24DO94855 1032 aaPredicted RBP15.89■□□□□ 0.13
CLK3-210ENST00000563112 CBX6O95503 412 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 CELA2AP08217 269 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 ZNF888P0CJ79 500 aaPredicted RBP15.89■□□□□ 0.13
CLK3-210ENST00000563112 MYBL2P10244 700 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 ITGAMP11215 1152 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 NCF1P14598 390 aaPredicted RBP15.89■□□□□ 0.13
CLK3-210ENST00000563112 JAK1P23458 1154 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 MAGEA4P43358 317 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 EFNA3P52797 238 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 TGFBIQ15582 683 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 NSDHLQ15738 373 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 ABHD17BQ5VST6 288 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 RPUSD3Q6P087 351 aaKnown RBP15.89■□□□□ 0.13
CLK3-210ENST00000563112 LANCL3Q6ZV70 420 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 ANKRD37Q7Z713 158 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 GPSM1Q86YR5 675 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 PPM1NQ8N819 430 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 PLPP5Q8NEB5 264 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 CATSPER1Q8NEC5 780 aa15.89■□□□□ 0.13
CLK3-210ENST00000563112 FBXO25Q8TCJ0 367 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms