RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PPM1MQ96MI6 270 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 CAMK1GQ96NX5 476 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 TSSK3Q96PN8 268 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 MTERF1Q99551 399 aaKnown RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 CPPED1Q9BRF8 314 aaPredicted RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 TBCDQ9BTW9 1192 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 YTHDF1Q9BYJ9 559 aaKnown RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 REXO4Q9GZR2 422 aaKnown RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 PAIP1Q9H074 479 aaKnown RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 EPB41L1Q9H4G0 881 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 TRIM45Q9H8W5 580 aaPredicted RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 UCK1Q9HA47 277 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 CLK4Q9HAZ1 481 aaKnown RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 IL1RL2Q9HB29 575 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 AGPAT4Q9NRZ5 378 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 FARSBQ9NSD9 589 aaKnown RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 TAS2R7Q9NYW3 318 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 IFT80Q9P2H3 777 aaPredicted RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 THEGQ9P2T0 379 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 TAC3Q9UHF0 121 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 AURKCQ9UQB9 309 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 TMEM98Q9Y2Y6 226 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 OR1A2Q9Y585 309 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 TICRRQ7Z2Z1 1910 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 ZFC3H1O60293 1989 aaKnown RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 CHD9Q3L8U1 2897 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 MKI67P46013 3256 aaKnown RBP7.21□□□□□ -1.26
VPS39-204ENST00000561818 RNF103-CHMP3A0A140T963 221 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 ASPDHA6ND91 283 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 C2orf74A8MZ97 194 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 H0YAE9 185 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 CLIC1O00299 241 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 VILLO15195 856 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 ZSCAN9O15535 394 aaPredicted RBP7.21□□□□□ -1.26
VPS39-204ENST00000561818 GPR37L1O60883 481 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 PIM1P11309 404 aaPredicted RBP7.21□□□□□ -1.26
VPS39-204ENST00000561818 CD22P20273 847 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 PPP2R1BP30154 601 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 NTSP30990 170 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 SOX9P48436 509 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 SRP54P61011 504 aaKnown RBP7.21□□□□□ -1.26
VPS39-204ENST00000561818 MS4A2Q01362 244 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 TSTA3Q13630 321 aaPredicted RBP7.21□□□□□ -1.26
VPS39-204ENST00000561818 BLMHQ13867 455 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 CAPRIN1Q14444 709 aaKnown RBP7.21□□□□□ -1.26
VPS39-204ENST00000561818 SLC9A5Q14940 896 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 RPE65Q16518 533 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 SLC5A12Q1EHB4 618 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.21□□□□□ -1.26
VPS39-204ENST00000561818 CCNYL2Q5T2Q4 361 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 ZNF648Q5T619 568 aaPredicted RBP7.21□□□□□ -1.26
VPS39-204ENST00000561818 KRT80Q6KB66 452 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 PPP4R4Q6NUP7 873 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 KIAA1211LQ6NV74 962 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 SUSD1Q6UWL2 747 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 ENPP7Q6UWV6 458 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 TMEM64Q6YI46 380 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 PARGQ86W56 976 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 CALHM3Q86XJ0 350 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 HIPK1Q86Z02 1210 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 TICAM1Q8IUC6 712 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 ZDHHC13Q8IUH4 622 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 ADGRG5Q8IZF4 528 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 TMEM145Q8NBT3 493 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 LCN9Q8WX39 176 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 OR5P2Q8WZ92 322 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 NR4A3Q92570 626 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 ZNF597Q96LX8 424 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 ZNF347Q96SE7 839 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 HBEGFQ99075 208 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 SPATA5L1Q9BVQ7 753 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 MS4A8Q9BY19 250 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 ABCG4Q9H172 646 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 SRMSQ9H3Y6 488 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 TMEM38AQ9H6F2 299 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 DDX31Q9H8H2 851 aaKnown RBP7.21□□□□□ -1.26
VPS39-204ENST00000561818 EVA1AQ9H8M9 152 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 COPS7BQ9H9Q2 264 aaPredicted RBP7.21□□□□□ -1.26
VPS39-204ENST00000561818 CACYBPQ9HB71 228 aaKnown RBP7.21□□□□□ -1.26
VPS39-204ENST00000561818 MBNL1Q9NR56 388 aaKnown RBP7.21□□□□□ -1.26
VPS39-204ENST00000561818 SEMA3GQ9NS98 782 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 DCAF13Q9NV06 445 aaKnown RBP7.21□□□□□ -1.26
VPS39-204ENST00000561818 TAS2R9Q9NYW1 312 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 SPASTQ9UBP0 616 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 DNAJB9Q9UBS3 223 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 SERGEFQ9UGK8 458 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 PHF11Q9UIL8 331 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 MOSPD1Q9UJG1 213 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 C3orf18Q9UK00 162 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 PADI4Q9UM07 663 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 ANGPT4Q9Y264 503 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 DLGAP4Q9Y2H0 992 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 CHD7Q9P2D1 2997 aa7.21□□□□□ -1.26
VPS39-204ENST00000561818 LRRK1Q38SD2 2015 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 CCDC163A0A0D9SF12 145 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 A0A1W2PPC4 97 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 C1orf226A1L170 272 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 C10orf142B7Z368 130 aa7.2□□□□□ -1.26
VPS39-204ENST00000561818 PLK4O00444 970 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms