RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 CAPS2Q9BXY5 557 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 DRC3Q9H069 523 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 WDR54Q9H977 334 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 TMBIM4Q9HC24 238 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 ZNF304Q9HCX3 659 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 COPG2Q9UBF2 871 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 XPR1Q9UBH6 696 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 CTSFQ9UBX1 484 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 ZFP69BQ9UJL9 534 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 CDC14AQ9UNH5 594 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 POLHQ9Y253 713 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 PTRH2Q9Y3E5 179 aaKnown RBP8.9□□□□□ -0.98
LDLR-211ENST00000560173 MAU2Q9Y6X3 613 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 BOD1L1Q8NFC6 3051 aa8.9□□□□□ -0.99
LDLR-211ENST00000560173 COL6A6A6NMZ7 2263 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 IGLV3-12A0A075B6K2 115 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 A0A0A6YYC8 382 aaPredicted RBP8.89□□□□□ -0.99
LDLR-211ENST00000560173 VSTM2BA6NLU5 285 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 I3L1I5 382 aaPredicted RBP8.89□□□□□ -0.99
LDLR-211ENST00000560173 K7EPI3 171 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 CLGNO14967 610 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 PRPF4O43172 522 aaKnown RBP eCLIP8.89□□□□□ -0.99
LDLR-211ENST00000560173 NDUFS4O43181 175 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 CCNT2O60583 730 aaKnown RBP8.89□□□□□ -0.99
LDLR-211ENST00000560173 UMODP07911 640 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 CD63P08962 238 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 RBP1P09455 135 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 SLC35G6P0C7Q6 338 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 GFAPP14136 432 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 CD22P20273 847 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 FOLR3P41439 243 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 ALDH18A1P54886 795 aaKnown RBP8.89□□□□□ -0.99
LDLR-211ENST00000560173 PCDH1Q08174 1060 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 ZNF844Q08AG5 666 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 E2F2Q14209 437 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 RASA2Q15283 850 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 TBCCQ15814 346 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 NKG7Q16617 165 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 NDUFA9Q16795 377 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 PFKFB4Q16877 469 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 PRSS41Q7RTY9 318 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 LCA5Q86VQ0 697 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.89□□□□□ -0.99
LDLR-211ENST00000560173 AFAP1L2Q8N4X5 818 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 PTGR2Q8N8N7 351 aaPredicted RBP8.89□□□□□ -0.99
LDLR-211ENST00000560173 AMER3Q8N944 861 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 KCT2Q8NC54 265 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 OR9A4Q8NGU2 314 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 ZCCHC10Q8TBK6 192 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 NT5CQ8TCD5 201 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 ACMSDQ8TDX5 336 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 EPS8L3Q8TE67 593 aaKnown RBP8.89□□□□□ -0.99
LDLR-211ENST00000560173 THAP4Q8WY91 577 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 MOCOSQ96EN8 888 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 SCYL1Q96KG9 808 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 SPSB2Q99619 263 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 MRPL57Q9BQC6 102 aaKnown RBP8.89□□□□□ -0.99
LDLR-211ENST00000560173 EFCAB11Q9BUY7 163 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 PITHD1Q9GZP4 211 aaPredicted RBP8.89□□□□□ -0.99
LDLR-211ENST00000560173 MRPL46Q9H2W6 279 aaKnown RBP8.89□□□□□ -0.99
LDLR-211ENST00000560173 NT5DC2Q9H857 520 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 CPSF2Q9P2I0 782 aaKnown RBP8.89□□□□□ -0.99
LDLR-211ENST00000560173 OPTCQ9UBM4 332 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 TBK1Q9UHD2 729 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 ADAM21Q9UKJ8 722 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 NXT1Q9UKK6 140 aaKnown RBP8.89□□□□□ -0.99
LDLR-211ENST00000560173 SLC22A7Q9Y694 548 aa8.89□□□□□ -0.99
LDLR-211ENST00000560173 LRRC14BA6NHZ5 514 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 SMIM23A6NLE4 172 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 H0YIG0 161 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 RGS16O15492 202 aaPredicted RBP8.88□□□□□ -0.99
LDLR-211ENST00000560173 H2AFYO75367 372 aaKnown RBP8.88□□□□□ -0.99
LDLR-211ENST00000560173 NSA2O95478 260 aaKnown RBP8.88□□□□□ -0.99
LDLR-211ENST00000560173 SERPIND1P05546 499 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 SBK3P0C264 359 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 FAM87AP0C7U9 286 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 PYGBP11216 843 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 IL1RNP18510 177 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 CXCR2P25025 360 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 GSTM2P28161 218 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 CASP2P42575 452 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 CCR10P46092 362 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 SLCO1A2P46721 670 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 AVPR1BP47901 424 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 IRF8Q02556 426 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 RGS1Q08116 209 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 HYAL2Q12891 473 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 CHIT1Q13231 466 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 ATP1A4Q13733 1029 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 DOC2AQ14183 400 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 RBBP5Q15291 538 aaKnown RBP8.88□□□□□ -0.99
LDLR-211ENST00000560173 PCBP2Q15366 365 aaKnown RBP eCLIP8.88□□□□□ -0.99
LDLR-211ENST00000560173 GLIPR1L2Q4G1C9 344 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 XKR6Q5GH73 641 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 METTL2BQ6P1Q9 378 aaKnown RBP8.88□□□□□ -0.99
LDLR-211ENST00000560173 TMIGD1Q6UXZ0 262 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 VN1R5Q7Z5H4 357 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 PPP1R32Q7Z5V6 425 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 MRGPREQ86SM8 312 aa8.88□□□□□ -0.99
LDLR-211ENST00000560173 PDSS2Q86YH6 399 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms