RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 GARNL3Q5VVW2 1013 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 ADNP2Q6IQ32 1131 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 VN1R5Q7Z5H4 357 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 HUS1BQ8NHY5 278 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 CCT6BQ92526 530 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 MACROD1Q9BQ69 325 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 SLC7A5P2Q9GIP4 190 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 ACTR5Q9H9F9 607 aaPredicted RBP16.32■□□□□ 0.2
LIG1-204ENST00000542460 PRM3Q9NNZ6 103 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 SRPK3Q9UPE1 567 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 ADAMTS20P59510 1910 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 CHD8Q9HCK8 2581 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 HEATR5BQ9P2D3 2071 aa16.32■□□□□ 0.2
LIG1-204ENST00000542460 CDRT15L2A8MXV6 281 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 FOXE1O00358 373 aaPredicted RBP16.31■□□□□ 0.2
LIG1-204ENST00000542460 ITM2AO43736 263 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 ULK1O75385 1050 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 UROSP10746 265 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 SLC5A2P31639 672 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 GCGRP47871 477 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 NEK2P51955 445 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 SHC2P98077 582 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 DDX39BQ13838 428 aaKnown RBP16.31■□□□□ 0.2
LIG1-204ENST00000542460 MUM1Q2TAK8 710 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 CLYBLQ8N0X4 340 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 KCT2Q8NC54 265 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 ZNF75CPQ92670 426 aaPredicted RBP16.31■□□□□ 0.2
LIG1-204ENST00000542460 MTFMTQ96DP5 389 aaKnown RBP16.31■□□□□ 0.2
LIG1-204ENST00000542460 KCNA7Q96RP8 456 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 MTERF1Q99551 399 aaKnown RBP16.31■□□□□ 0.2
LIG1-204ENST00000542460 ULBP3Q9BZM4 244 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 SLC6A16Q9GZN6 736 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 TNFRSF12AQ9NP84 129 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 ASCL3Q9NQ33 180 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 THSD1Q9NS62 852 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 CUTCQ9NTM9 273 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 THAP1Q9NVV9 213 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 PSD3Q9NYI0 1048 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 FOXJ2Q9P0K8 574 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.31■□□□□ 0.2
LIG1-204ENST00000542460 TIMM22Q9Y584 194 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 ASPMQ8IZT6 3477 aa16.31■□□□□ 0.2
LIG1-204ENST00000542460 LRIT2A6NDA9 550 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 URADA6NGE7 173 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 MAGEB17A8MXT2 336 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 MANBAO00462 879 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 AZIN1O14977 448 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 BRINP1O60477 761 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 CPNE3O75131 537 aaKnown RBP16.3■□□□□ 0.2
LIG1-204ENST00000542460 SNNO75324 88 aaPredicted RBP16.3■□□□□ 0.2
LIG1-204ENST00000542460 LYPLA1O75608 230 aaPredicted RBP16.3■□□□□ 0.2
LIG1-204ENST00000542460 KIAA0754O94854 1291 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 NTRK1P04629 796 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 FOXA1P55317 472 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 STXBP1P61764 594 aaKnown RBP16.3■□□□□ 0.2
LIG1-204ENST00000542460 ZNF33BQ06732 778 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 HYAL2Q12891 473 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 NDUFA9Q16795 377 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 SH2D4BQ5SQS7 431 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 RHBDD2Q6NTF9 364 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 TMEM214Q6NUQ4 689 aaKnown RBP16.3■□□□□ 0.2
LIG1-204ENST00000542460 ATG14Q6ZNE5 492 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 CHSY3Q70JA7 882 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 ARHGEF39Q8N4T4 335 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 FAM76AQ8TAV0 307 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 SELENOMQ8WWX9 145 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 CLIP3Q96DZ5 547 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 CMTM7Q96FZ5 175 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 C20orf27Q9GZN8 174 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 ILKAPQ9H0C8 392 aaPredicted RBP16.3■□□□□ 0.2
LIG1-204ENST00000542460 ZNF395Q9H8N7 513 aaPredicted RBP16.3■□□□□ 0.2
LIG1-204ENST00000542460 DMRT3Q9NQL9 472 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 PPT2Q9UMR5 302 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 TRAF6Q9Y4K3 522 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 SLC22A7Q9Y694 548 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 KIF26BQ2KJY2 2108 aa16.3■□□□□ 0.2
LIG1-204ENST00000542460 STK17BO94768 372 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 TBX6O95947 436 aaPredicted RBP16.29■□□□□ 0.2
LIG1-204ENST00000542460 PDYNP01213 254 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 ZNF28P17035 718 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 ALAS2P22557 587 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 PTX3P26022 381 aaPredicted RBP16.29■□□□□ 0.2
LIG1-204ENST00000542460 CD82P27701 267 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 FAM53BQ14153 422 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 ADPRMQ3LIE5 342 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 SGO1Q5FBB7 561 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 TCHHL1Q5QJ38 904 aaPredicted RBP16.29■□□□□ 0.2
LIG1-204ENST00000542460 CLEC6AQ6EIG7 209 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 TTLL10Q6ZVT0 673 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 KIRREL3Q8IZU9 778 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 SLC38A9Q8NBW4 561 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 LRRC8CQ8TDW0 803 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 CKAP2Q8WWK9 683 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 MS4A8Q9BY19 250 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 SPRY4Q9C004 299 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 REXO4Q9GZR2 422 aaKnown RBP16.29■□□□□ 0.2
LIG1-204ENST00000542460 FARSBQ9NSD9 589 aaKnown RBP16.29■□□□□ 0.2
LIG1-204ENST00000542460 TXLNGQ9NUQ3 528 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 ZDHHC2Q9UIJ5 367 aa16.29■□□□□ 0.2
LIG1-204ENST00000542460 RAP2CQ9Y3L5 183 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms