RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SLCO1C1Q9NYB5 712 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 NDUFAF4Q9P032 175 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 MID2Q9UJV3 735 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 ZNF222Q9UK12 451 aa9.15□□□□□ -0.94
CLIP1-214ENST00000540539 NDRG4Q9ULP0 352 aaKnown RBP9.15□□□□□ -0.94
CLIP1-214ENST00000540539 COL11A1P12107 1806 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-214ENST00000540539 CCL15-CCL14A0A0B4J2E2 113 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 CDC7O00311 574 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 QSOX1O00391 747 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 RTCAO00442 366 aaKnown RBP9.15□□□□□ -0.95
CLIP1-214ENST00000540539 PPP1R11O60927 126 aaPredicted RBP9.15□□□□□ -0.95
CLIP1-214ENST00000540539 ITGB1P05556 798 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 ZNF8P17098 575 aaPredicted RBP9.15□□□□□ -0.95
CLIP1-214ENST00000540539 SPI1P17947 270 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 PAMP19021 973 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 VEGFCP49767 419 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 OSTNP61366 133 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 KCNJ10P78508 379 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 STX4Q12846 297 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 USP10Q14694 798 aaKnown RBP9.15□□□□□ -0.95
CLIP1-214ENST00000540539 SNAPC1Q16533 368 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 CCL15Q16663 113 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 MICBQ29980 383 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 PROX2Q3B8N5 592 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 NOMO2Q5JPE7 1267 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 LCN1P1Q5VSP4 162 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 AADACL4Q5VUY2 407 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 FRMPD2BQ6IN97 320 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 CAPN13Q6MZZ7 669 aaPredicted RBP9.15□□□□□ -0.95
CLIP1-214ENST00000540539 TMEM88Q6PEY1 159 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 EIF3MQ7L2H7 374 aaKnown RBP9.15□□□□□ -0.95
CLIP1-214ENST00000540539 GALNT5Q7Z7M9 940 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 TMEM179BQ7Z7N9 219 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 ENTHD1Q8IYW4 607 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 FAM86B1Q8N7N1 296 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 NANOGP1Q8N7R0 232 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 L3MBTL4Q8NA19 623 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 DMBX1Q8NFW5 382 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 ATG4CQ96DT6 458 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 ZBED6CLQ96FA7 236 aaPredicted RBP9.15□□□□□ -0.95
CLIP1-214ENST00000540539 LURAP1Q96LR2 239 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 CGRRF1Q99675 332 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 MXRA8Q9BRK3 442 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 NTMT1Q9BV86 223 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 TASP1Q9H6P5 420 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 SEBOXQ9HB31 216 aaPredicted RBP9.15□□□□□ -0.95
CLIP1-214ENST00000540539 EMC7Q9NPA0 242 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 CPA4Q9UI42 421 aa9.15□□□□□ -0.95
CLIP1-214ENST00000540539 RUVBL2Q9Y230 463 aaKnown RBP9.15□□□□□ -0.95
CLIP1-214ENST00000540539 SAMHD1Q9Y3Z3 626 aaKnown RBP9.15□□□□□ -0.95
CLIP1-214ENST00000540539 ADAM12O43184 909 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 RGS11O94810 467 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 KDM4BO94953 1096 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 MT-CYBP00156 380 aaPredicted RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 C9P02748 559 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 SLC10A3P09131 477 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 ALDOCP09972 364 aaKnown RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 PRKAR1AP10644 381 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 HNRNPLP14866 589 aaKnown RBP eCLIP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 TIMP2P16035 220 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 G0S2P27469 103 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 PTGFRP43088 359 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 GLRBP48167 497 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 RGS6P49758 472 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 CRISP3P54108 245 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 TBX4P57082 545 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 OR4D2P58180 307 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 RPS7P62081 194 aaKnown RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 RIPPLY1Q0D2K3 151 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 XKR9Q5GH70 373 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 ODR4Q5SWX8 454 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 FSTL4Q6MZW2 842 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 GPAT2Q6NUI2 795 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 SHQ1Q6PI26 577 aaKnown RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 C1orf186Q6ZWK4 172 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 HSD17B13Q7Z5P4 300 aaPredicted RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 SVOPLQ8N434 492 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 C14orf144Q96I85 54 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 HHIPL1Q96JK4 782 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 SFXN2Q96NB2 322 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 TMEM74Q96NL1 305 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 COL21A1Q96P44 957 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 SSX3Q99909 188 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 MSTO1Q9BUK6 570 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 TRIM54Q9BYV2 358 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 OSBPL2Q9H1P3 480 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 C11orf49Q9H6J7 331 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 HSPBP1Q9NZL4 362 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 XPR1Q9UBH6 696 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 DNAJB9Q9UBS3 223 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 PPIEQ9UNP9 301 aaKnown RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 COQ4Q9Y3A0 265 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 OAS3Q9Y6K5 1087 aaKnown RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 SYNJ2BP-COX16A0A087WUM0 186 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 LOC102723532A0A0G2JNH3 316 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 INMT-MINDY4F8WBC2 141 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 GTPBP1O00178 669 aaKnown RBP9.14□□□□□ -0.95
CLIP1-214ENST00000540539 GSTA4O15217 222 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 DLX3O60479 287 aa9.14□□□□□ -0.95
CLIP1-214ENST00000540539 ULK1O75385 1050 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms