RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 FAM107BQ9H098 131 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 RHBGQ9H310 441 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 SLCO1B3Q9NPD5 702 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 DHCR7Q9UBM7 475 aaKnown RBP12.38□□□□□ -0.43
CCDC42-202ENST00000539522 DKK4Q9UBT3 224 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.38□□□□□ -0.43
CCDC42-202ENST00000539522 PCDHB3Q9Y5E6 796 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 AK5Q9Y6K8 562 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 AP1M2Q9Y6Q5 423 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 CCDC88CQ9P219 2028 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 SCN3AQ9NY46 2000 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 CLGNO14967 610 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 ZSCAN9O15535 394 aaPredicted RBP12.37□□□□□ -0.43
CCDC42-202ENST00000539522 CNOT3O75175 753 aaKnown RBP12.37□□□□□ -0.43
CCDC42-202ENST00000539522 OR4F21O95013 312 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 ETHE1O95571 254 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 EIF2S1P05198 315 aaKnown RBP12.37□□□□□ -0.43
CCDC42-202ENST00000539522 CHRNGP07510 517 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 SMIM10L1P0DMW3 83 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 HNRNPH1P31943 449 aaKnown RBP12.37□□□□□ -0.43
CCDC42-202ENST00000539522 AHRP35869 848 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 FOXL2P58012 376 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 CYP4F2P78329 520 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 OCRLQ01968 901 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 NAA25Q14CX7 972 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 TMEM214Q6NUQ4 689 aaKnown RBP12.37□□□□□ -0.43
CCDC42-202ENST00000539522 TMIGD1Q6UXZ0 262 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 COX15Q7KZN9 410 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 UBE3DQ7Z6J8 389 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 BPHLQ86WA6 291 aaPredicted RBP12.37□□□□□ -0.43
CCDC42-202ENST00000539522 CSNK1A1LQ8N752 337 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 CCNYL1Q8N7R7 359 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 GALNT6Q8NCL4 622 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 OR7G3Q8NG95 312 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 OR8K5Q8NH50 307 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 NT5CQ8TCD5 201 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 SMIM10Q96HG1 83 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 GBP5Q96PP8 586 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 ZNF382Q96SR6 550 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 AIF1LQ9BQI0 150 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 SLC6A16Q9GZN6 736 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 ILKAPQ9H0C8 392 aaPredicted RBP12.37□□□□□ -0.43
CCDC42-202ENST00000539522 RABEP2Q9H5N1 569 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 FARSBQ9NSD9 589 aaKnown RBP12.37□□□□□ -0.43
CCDC42-202ENST00000539522 AKAP7Q9P0M2 348 aaPredicted RBP12.37□□□□□ -0.43
CCDC42-202ENST00000539522 ZFP69BQ9UJL9 534 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 SSUH2Q9Y2M2 353 aa12.37□□□□□ -0.43
CCDC42-202ENST00000539522 HYKKA2RU49 373 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 H0YIV9 168 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 ITM2AO43736 263 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 SNX3O60493 162 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 UGDHO60701 494 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 CLDN9O95484 217 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 HSPA4LO95757 839 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 TROVE2P10155 538 aaKnown RBP eCLIP12.36□□□□□ -0.43
CCDC42-202ENST00000539522 WT1P19544 449 aaPredicted RBP12.36□□□□□ -0.43
CCDC42-202ENST00000539522 F8A1P23610 371 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 RBMS1P29558 406 aaKnown RBP12.36□□□□□ -0.43
CCDC42-202ENST00000539522 HTR6P50406 440 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 NEK2P51955 445 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 EFNA3P52797 238 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 GALNT1Q10472 559 aaPredicted RBP12.36□□□□□ -0.43
CCDC42-202ENST00000539522 CLN3Q13286 438 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 RCN2Q14257 317 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 RBBP5Q15291 538 aaKnown RBP12.36□□□□□ -0.43
CCDC42-202ENST00000539522 ZRSR2Q15696 482 aaKnown RBP12.36□□□□□ -0.43
CCDC42-202ENST00000539522 ADPRMQ3LIE5 342 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 GGTA1PQ4G0N0 100 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 LIPJQ5W064 366 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 RHBDD2Q6NTF9 364 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 FAM199XQ6PEV8 388 aaPredicted RBP12.36□□□□□ -0.43
CCDC42-202ENST00000539522 UNQ6494/PRO21346Q6UXR6 183 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 ASPGQ86U10 573 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 DSELQ8IZU8 1212 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 AFAP1L2Q8N4X5 818 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 AMER3Q8N944 861 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 NKD1Q969G9 470 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 THAP11Q96EK4 314 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 ZNF578Q96N58 590 aaPredicted RBP12.36□□□□□ -0.43
CCDC42-202ENST00000539522 TEFMQ96QE5 360 aaKnown RBP12.36□□□□□ -0.43
CCDC42-202ENST00000539522 TRMOQ9BU70 441 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 EFCAB11Q9BUY7 163 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 TRIM55Q9BYV6 548 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 ASPSCR1Q9BZE9 553 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 ULBP3Q9BZM4 244 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 SHCBP1LQ9BZQ2 653 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 ACTR8Q9H981 624 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 ACTR5Q9H9F9 607 aaPredicted RBP12.36□□□□□ -0.43
CCDC42-202ENST00000539522 EML4Q9HC35 981 aaKnown RBP12.36□□□□□ -0.43
CCDC42-202ENST00000539522 LHX9Q9NQ69 397 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 SERTAD3Q9UJW9 196 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 TSC22D4Q9Y3Q8 395 aa12.36□□□□□ -0.43
CCDC42-202ENST00000539522 LOC101059948A0A1B0GTJ6 334 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 LRIT2A6NDA9 550 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 FFAR3O14843 346 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 GPR42O15529 346 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 NDUFS4O43181 175 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 EFSO43281 561 aa12.35□□□□□ -0.43
CCDC42-202ENST00000539522 LYPLA1O75608 230 aaPredicted RBP12.35□□□□□ -0.43
CCDC42-202ENST00000539522 KLHL18O94889 574 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms