RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 TTI1O43156 1089 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 MAN1A2O60476 641 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 CDC123O75794 336 aaPredicted RBP10.68□□□□□ -0.7
VPS28-214ENST00000531032 TSPAN12O95859 305 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 ELAVL4P26378 380 aaKnown RBP10.68□□□□□ -0.7
VPS28-214ENST00000531032 PTGER4P35408 488 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 CD96P40200 585 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 FNTAP49354 379 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 CCR8P51685 355 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 CDKN2DP55273 166 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 PWP1Q13610 501 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 USP10Q14694 798 aaKnown RBP10.68□□□□□ -0.7
VPS28-214ENST00000531032 OR1C1Q15619 314 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 NSDHLQ15738 373 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 ZNF630Q2M218 657 aaPredicted RBP10.68□□□□□ -0.7
VPS28-214ENST00000531032 SFT2D3Q587I9 215 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 RBM20Q5T481 1227 aaKnown RBP10.68□□□□□ -0.7
VPS28-214ENST00000531032 RNASEH2BQ5TBB1 312 aaKnown RBP10.68□□□□□ -0.7
VPS28-214ENST00000531032 STRA8Q7Z7C7 330 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 CNTN4Q8IWV2 1026 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 PALM2Q8IXS6 379 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 LGI4Q8N135 537 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 SLC35F6Q8N357 371 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 SLC5A8Q8N695 610 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 ZNF740Q8NDX6 193 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 OR4K1Q8NGD4 311 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 OR5T3Q8NGG3 340 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 GABPB2Q8TAK5 448 aaPredicted RBP10.68□□□□□ -0.7
VPS28-214ENST00000531032 GRK7Q8WTQ7 553 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 MOCOSQ96EN8 888 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 LINGO1Q96FE5 620 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 PEX11GQ96HA9 241 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 GPR137Q96N19 417 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 LPAR4Q99677 370 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 UTP23Q9BRU9 249 aaKnown RBP10.68□□□□□ -0.7
VPS28-214ENST00000531032 HAUS8Q9BT25 410 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 RBCK1Q9BYM8 510 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 CHST11Q9NPF2 352 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 TRMT1Q9NXH9 659 aaKnown RBP10.68□□□□□ -0.7
VPS28-214ENST00000531032 ANKRD10Q9NXR5 420 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 ZNF835Q9Y2P0 537 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 PDZD2O15018 2839 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 TRBC2A0A5B9 178 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 ZNF860A6NHJ4 632 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 GABRR3A8MPY1 467 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 CDK2AP1O14519 115 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 NDUFS4O43181 175 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 GALR3O60755 368 aaPredicted RBP10.67□□□□□ -0.7
VPS28-214ENST00000531032 NEURL1O76050 574 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 TTC4O95801 387 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 MLYCDO95822 493 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 AHSGP02765 367 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 FHP07954 510 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 HIST1H2AGP0C0S8 130 aaPredicted RBP10.67□□□□□ -0.7
VPS28-214ENST00000531032 HIST1H2ADP20671 130 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 AGAP20933 346 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 HTR1EP28566 365 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 CASP6P55212 293 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 AP1S2P56377 157 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 SLC26A5P58743 744 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 ADORA2A-AS1P86434 159 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 MEF2AQ02078 507 aaPredicted RBP10.67□□□□□ -0.7
VPS28-214ENST00000531032 C3AR1Q16581 482 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 KRTCAP3Q53RY4 240 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 SPANXN3Q5MJ09 141 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 DUPD1Q68J44 220 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 SPINK14Q6IE38 97 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 NIPAL1Q6NVV3 410 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 XKRXQ6PP77 449 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 Q6ZPB1 254 aaPredicted RBP10.67□□□□□ -0.7
VPS28-214ENST00000531032 KIAA0408Q6ZU52 694 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 GALNT7Q86SF2 657 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 TMEM178AQ8NBL3 297 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 OR56A3Q8NH54 315 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 TSLPQ969D9 159 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 ALKBH8Q96BT7 664 aaKnown RBP10.67□□□□□ -0.7
VPS28-214ENST00000531032 TBC1D20Q96BZ9 403 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 PYCR2Q96C36 320 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 SNF8Q96H20 258 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 HIST1H2AHQ96KK5 128 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 FRMD6Q96NE9 622 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 OR4K3Q96R72 315 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 HIST1H2AJQ99878 128 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 H2AFJQ9BTM1 129 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 HES7Q9BYE0 225 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 KLHL1Q9NR64 748 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 ARL15Q9NXU5 204 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 SH3BGRL2Q9UJC5 107 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 TINAGQ9UJW2 476 aa10.67□□□□□ -0.7
VPS28-214ENST00000531032 PCNX1Q96RV3 2341 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 OR1F1O43749 312 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 CD46P15529 392 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 ALOX12P18054 663 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 JAK1P23458 1154 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 EEF1DP29692 281 aaKnown RBP10.66□□□□□ -0.7
VPS28-214ENST00000531032 OR4D2P58180 307 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 TAS2R50P59544 299 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 IL2P60568 153 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 SKP1P63208 163 aa10.66□□□□□ -0.7
VPS28-214ENST00000531032 ALDH6A1Q02252 535 aaKnown RBP10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms