RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 RBBP7Q16576 425 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 TUBB8Q3ZCM7 444 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 GRTP1Q5TC63 336 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 C8orf74Q6P047 294 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 Q6ZS92 163 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 ADAMTSL2Q86TH1 951 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 RELL1Q8IUW5 271 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 PDPRQ8NCN5 879 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 OR51Q1Q8NH59 317 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 UTP15Q8TED0 518 aaKnown RBP10.07□□□□□ -0.8
CD44-227ENST00000528086 KIAA1191Q96A73 305 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 HIST1H2AHQ96KK5 128 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 BARD1Q99728 777 aaKnown RBP10.07□□□□□ -0.8
CD44-227ENST00000528086 HIST1H2AJQ99878 128 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 H2AFJQ9BTM1 129 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 CLMPQ9H6B4 373 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 ZNF160Q9HCG1 818 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 MKKSQ9NPJ1 570 aaPredicted RBP10.07□□□□□ -0.8
CD44-227ENST00000528086 ATP13A2Q9NQ11 1180 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 COPG2Q9UBF2 871 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 ZNF490Q9ULM2 529 aaPredicted RBP10.07□□□□□ -0.8
CD44-227ENST00000528086 NAALAD2Q9Y3Q0 740 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 CLDN16Q9Y5I7 305 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 SLC22A7Q9Y694 548 aa10.07□□□□□ -0.8
CD44-227ENST00000528086 USP9YO00507 2555 aaPredicted RBP10.07□□□□□ -0.8
CD44-227ENST00000528086 TXNDC9O14530 226 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 GALR3O60755 368 aaPredicted RBP10.06□□□□□ -0.8
CD44-227ENST00000528086 HPP00738 406 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 ALDOAP04075 364 aaKnown RBP10.06□□□□□ -0.8
CD44-227ENST00000528086 PRR35P0CG20 571 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 ZNF888P0CJ79 500 aaPredicted RBP10.06□□□□□ -0.8
CD44-227ENST00000528086 RNF224P0DH78 156 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 ACPPP15309 386 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 HNRNPH1P31943 449 aaKnown RBP10.06□□□□□ -0.8
CD44-227ENST00000528086 AHRP35869 848 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 XCR1P46094 333 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 HSPA7P48741 367 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 CKAP4Q07065 602 aaKnown RBP10.06□□□□□ -0.8
CD44-227ENST00000528086 E2F2Q14209 437 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 INPP5JQ15735 1006 aaPredicted RBP10.06□□□□□ -0.8
CD44-227ENST00000528086 FAM219BQ5XKK7 198 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 TMPRSS11BQ86T26 416 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 CTAGE3PQ8IX95 158 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.06□□□□□ -0.8
CD44-227ENST00000528086 PLD6Q8N2A8 252 aaKnown RBP10.06□□□□□ -0.8
CD44-227ENST00000528086 CLEC1AQ8NC01 280 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 CAMKVQ8NCB2 501 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 CATSPER1Q8NEC5 780 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 ATL1Q8WXF7 558 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 ZNF592Q92610 1267 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 TSLPQ969D9 159 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 PNPLA2Q96AD5 504 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 NXNL1Q96CM4 212 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 WDR34Q96EX3 536 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 CYTH2Q99418 400 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 NPAS2Q99743 824 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 RBCK1Q9BYM8 510 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 TRIM54Q9BYV2 358 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 ZNF700Q9H0M5 742 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 CDC42EP4Q9H3Q1 356 aaKnown RBP10.06□□□□□ -0.8
CD44-227ENST00000528086 PELI2Q9HAT8 420 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 ZNF358Q9NW07 568 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 C5AR2Q9P296 337 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 ZFP69BQ9UJL9 534 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 CDC14AQ9UNH5 594 aa10.06□□□□□ -0.8
CD44-227ENST00000528086 ICE1Q9Y2F5 2266 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 LRRC14BA6NHZ5 514 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 FAM227AF5H4B4 570 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 TGFBR3LH3BV60 316 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 UBXN8O00124 270 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 NDUFS4O43181 175 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 CHST10O43529 356 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 MAN1A2O60476 641 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 WISP2O76076 250 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 WDR47O94967 919 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 IGHEP01854 428 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 C2P06681 752 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 ANXA5P08758 320 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 C1GALT1C1LP0DN25 315 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 ITGAMP11215 1152 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 STMN1P16949 149 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 ALOX12P18054 663 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 ITGA3P26006 1051 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 GCAP28676 217 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 SPRP35270 261 aaPredicted RBP10.05□□□□□ -0.8
CD44-227ENST00000528086 MAGEA12P43365 314 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 HNMTP50135 292 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 RAB8AP61006 207 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 PWP1Q13610 501 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 DEFB134Q4QY38 66 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 MROH9Q5TGP6 573 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 B3GNTL1Q67FW5 361 aaPredicted RBP10.05□□□□□ -0.8
CD44-227ENST00000528086 NDUFAF7Q7L592 441 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 GPSM1Q86YR5 675 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 TMEM52Q8NDY8 209 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 CPT1CQ8TCG5 803 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 BRIX1Q8TDN6 353 aaKnown RBP10.05□□□□□ -0.8
CD44-227ENST00000528086 KCTD4Q8WVF5 259 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 CDKL2Q92772 493 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 SNRNP40Q96DI7 357 aaKnown RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms