RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 LMX1AQ8TE12 382 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 ATL1Q8WXF7 558 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 PEX13Q92968 403 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 MSANTD3Q96H12 275 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 ZNF486Q96H40 463 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 SMAD5Q99717 465 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 NPLQ9BXD5 320 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 FAM126AQ9BYI3 521 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 SCML1Q9UN30 329 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 TRAF6Q9Y4K3 522 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 A0A1B0GVT2 93 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 TSPAN11A1L157 253 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 PRORSD1PA6NEY8 169 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 H7C0S8 307 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 TNFRSF10AO00220 468 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 SOD1P00441 154 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 PGRP06401 933 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 CELA2BP08218 269 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 ZNF26P17031 533 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 JUNDP17535 347 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 CRHR1P34998 444 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 PTGS2P35354 604 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 NCS1P62166 190 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 LAPTM5Q13571 262 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 ZNF846Q147U1 533 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 VPS26BQ4G0F5 336 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 CLEC6AQ6EIG7 209 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 LYPD8Q6UX82 237 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 FAM83HQ6ZRV2 1179 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 CHERPQ8IWX8 916 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 TMEM105Q8N8V8 129 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 OR56A4Q8NGH8 313 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 GPR150Q8NGU9 434 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 CDC26Q8NHZ8 85 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 CHPT1Q8WUD6 406 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 KCNJ9Q92806 393 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 NCLNQ969V3 563 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 BMFQ96LC9 184 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 ALPK1Q96QP1 1244 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 C1QTNF2Q9BXJ5 285 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 LHPPQ9H008 270 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 SGK2Q9HBY8 427 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 FZD4Q9ULV1 537 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 DHRS7Q9Y394 339 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 DHRS12A0PJE2 317 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 C12orf71A8MTZ7 269 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 PPP6CO00743 305 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 DLX3O60479 287 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 TRIM13O60858 407 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 FADS2O95864 444 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 TP53P04637 393 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 GSNP06396 782 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 CHRM5P08912 532 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 PRKACAP17612 351 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 IL12AP29459 219 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 RAB25P57735 213 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 MEP1AQ16819 746 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 PGM2L1Q6PCE3 622 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 USP30Q70CQ3 517 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 C1orf210Q8IVY1 113 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 NRSN1Q8IZ57 195 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 TP53I13Q8NBR0 393 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 OR5AR1Q8NGP9 310 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 STAG3L4Q8TBR4 150 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 WDR92Q96MX6 357 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 C1orf21Q9H246 121 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 FBRSQ9HAH7 460 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 RASSF1Q9NS23 344 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 EMCNQ9ULC0 261 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 CNTRLQ7Z7A1 2325 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 URB1O60287 2271 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 PATE3B3GLJ2 98 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 TRIM38O00635 465 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 ANGPT2O15123 496 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 INMTO95050 263 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 RBP1P09455 135 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 CD1DP15813 335 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 PRKACGP22612 351 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 PRDX6P30041 224 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 NAE1Q13564 534 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 PCLAFQ15004 111 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 ZMYND11Q15326 602 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 DEFB133Q30KQ1 61 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 C6orf10Q5SRN2 563 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 CYS1Q717R9 158 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 GALNT12Q8IXK2 581 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 TNIP2Q8NFZ5 429 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 VPS33AQ96AX1 596 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 CCDC177Q9NQR7 707 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 IGSF5Q9NSI5 407 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 MED16Q9Y2X0 877 aa8.37□□□□□ -1.07
LIMCH1-209ENST00000509277 LRRK1Q38SD2 2015 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 DMDP11532 3685 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 PRSS38A1L453 326 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 SMIM30A4D0T7 59 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 C19orf67A6NJJ6 358 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 IGHV4-34P06331 123 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 DHRS4L1P0CG22 281 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 CLCN7P51798 805 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 ILF3Q12906 894 aaKnown RBP eCLIP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms