RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ANKRD33Q7Z3H0 272 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 PIWIL3Q7Z3Z3 882 aaKnown RBP2.56□□□□□ -2
CCDC88A-212ENST00000474059 AMIGO1Q86WK6 493 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 KLHL7Q8IXQ5 586 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 Q8N7P7 452 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 UXS1Q8NBZ7 420 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 NOA1Q8NC60 698 aaKnown RBP2.56□□□□□ -2
CCDC88A-212ENST00000474059 OR10G8Q8NGN5 311 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 MIPOL1Q8TD10 442 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 RIT1Q92963 219 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 PGM2Q96G03 612 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 BSCL2Q96G97 398 aaPredicted RBP2.56□□□□□ -2
CCDC88A-212ENST00000474059 MLPHQ9BV36 600 aaPredicted RBP2.56□□□□□ -2
CCDC88A-212ENST00000474059 CPVLQ9H3G5 476 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 PANK4Q9NVE7 773 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 ARGLU1Q9NWB6 273 aaPredicted RBP2.56□□□□□ -2
CCDC88A-212ENST00000474059 OR6C2Q9NZP2 312 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 THEGQ9P2T0 379 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 ARMCX3Q9UH62 379 aaPredicted RBP2.56□□□□□ -2
CCDC88A-212ENST00000474059 ARID2Q68CP9 1835 aa2.56□□□□□ -2
CCDC88A-212ENST00000474059 A0A0U1RQK1 487 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 ZNF320A2RRD8 509 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 OOEPA6NGQ2 149 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 CCL24O00175 119 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 SLC30A4O14863 429 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 EPHB6O15197 1021 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 STX6O43752 255 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 IDH3BO43837 385 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 RLN1P04808 185 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 ANKRD34CP0C6C1 535 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 EPORP19235 508 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 CYP2A7P20853 494 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 ATP5DP30049 168 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 ALDH1B1P30837 517 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 TSFMP43897 325 aaKnown RBP2.55□□□□□ -2
CCDC88A-212ENST00000474059 TMEM50BP56557 158 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 TYSND1Q2T9J0 566 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 ANKRD20A4Q4UJ75 823 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 ANKRD20A8PQ5CZ79 823 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 SLC25A53Q5H9E4 307 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 ANKRD20A2Q5SQ80 823 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 SPOUT1Q5T280 376 aaKnown RBP2.55□□□□□ -2
CCDC88A-212ENST00000474059 ANKRD20A1Q5TYW2 823 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 ANKRD20A3Q5VUR7 823 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 FAM166AQ6J272 317 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 BTNL8Q6UX41 500 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 LINC00696Q6ZRV3 163 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 HOOK3Q86VS8 718 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 KLHDC1Q8N7A1 406 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 ATAD1Q8NBU5 361 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 FIBINQ8TAL6 211 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 MAPK15Q8TD08 544 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 P2RX5Q93086 422 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 PYCR2Q96C36 320 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 NDNQ99608 321 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 MAP3K3Q99759 626 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 C2orf40Q9H1Z8 148 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 ACTL8Q9H568 366 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 PHPT1Q9NRX4 125 aaPredicted RBP2.55□□□□□ -2
CCDC88A-212ENST00000474059 SEPT10Q9P0V9 454 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 ITGA11Q9UKX5 1188 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 CDH7Q9ULB5 785 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 CHKBQ9Y259 395 aa2.55□□□□□ -2
CCDC88A-212ENST00000474059 IGSF1Q8N6C5 1336 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 ASB14A6NK59 587 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 YDJCA8MPS7 323 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 ZNF195O14628 629 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 FLRT2O43155 660 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 BAG3O95817 575 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 STAG3L1P0CL83 205 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 PRKAR1AP10644 381 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 GP1BBP13224 206 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 PRKACGP22612 351 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 LHCGRP22888 699 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 COPB2P35606 906 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 SOAT1P35610 550 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 SULT2A1Q06520 285 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 TRAP1Q12931 704 aaKnown RBP2.54□□□□□ -2
CCDC88A-212ENST00000474059 SLMAPQ14BN4 828 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 RBBP7Q16576 425 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 GPR33Q49SQ1 333 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 PDLIM3Q53GG5 364 aaPredicted RBP2.54□□□□□ -2
CCDC88A-212ENST00000474059 LCN1P1Q5VSP4 162 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 UGT3A1Q6NUS8 523 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 CTR9Q6PD62 1173 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 NHLRC1Q6VVB1 395 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 RAPH1Q70E73 1250 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 PTAR1Q7Z6K3 402 aaPredicted RBP2.54□□□□□ -2
CCDC88A-212ENST00000474059 SLC47A2Q86VL8 602 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 IQCA1Q86XH1 822 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 TMCO5AQ8N6Q1 288 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 NUP37Q8NFH4 326 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 OR13C3Q8NGS6 347 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 SEPT1Q8WYJ6 367 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 TSACCQ96A04 125 aaPredicted RBP2.54□□□□□ -2
CCDC88A-212ENST00000474059 SGF29Q96ES7 293 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 GDAP1L1Q96MZ0 367 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 UTP14AQ9BVJ6 771 aaKnown RBP2.54□□□□□ -2
CCDC88A-212ENST00000474059 MTMR12Q9C0I1 747 aa2.54□□□□□ -2
CCDC88A-212ENST00000474059 RIMS4Q9H426 269 aaPredicted RBP2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms