RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 APCDD1Q8J025 514 aa16.71■□□□□ 0.27
PHRF1-202ENST00000413872 CPXM2Q8N436 756 aa16.71■□□□□ 0.27
PHRF1-202ENST00000413872 OR5P2Q8WZ92 322 aa16.71■□□□□ 0.27
PHRF1-202ENST00000413872 FAM3CQ92520 227 aa16.71■□□□□ 0.27
PHRF1-202ENST00000413872 MAPKAP1Q9BPZ7 522 aa16.71■□□□□ 0.27
PHRF1-202ENST00000413872 SLC17A9Q9BYT1 436 aa16.71■□□□□ 0.27
PHRF1-202ENST00000413872 TPK1Q9H3S4 243 aa16.71■□□□□ 0.27
PHRF1-202ENST00000413872 CTPS2Q9NRF8 586 aa16.71■□□□□ 0.27
PHRF1-202ENST00000413872 C5P01031 1676 aa16.71■□□□□ 0.27
PHRF1-202ENST00000413872 OR1I1O60431 355 aa16.71■□□□□ 0.27
PHRF1-202ENST00000413872 PRKD3O94806 890 aa16.71■□□□□ 0.27
PHRF1-202ENST00000413872 GBX2P52951 348 aaPredicted RBP16.71■□□□□ 0.27
PHRF1-202ENST00000413872 SLC10A2Q12908 348 aaPredicted RBP16.71■□□□□ 0.27
PHRF1-202ENST00000413872 FBXO42Q6P3S6 717 aa16.71■□□□□ 0.27
PHRF1-202ENST00000413872 SLC36A4Q6YBV0 504 aa16.71■□□□□ 0.27
PHRF1-202ENST00000413872 IGDCC3Q8IVU1 814 aa16.71■□□□□ 0.27
PHRF1-202ENST00000413872 BORCS5Q969J3 196 aa16.71■□□□□ 0.27
PHRF1-202ENST00000413872 COQ10BQ9H8M1 238 aa16.71■□□□□ 0.27
PHRF1-202ENST00000413872 GPN1Q9HCN4 374 aaPredicted RBP16.71■□□□□ 0.27
PHRF1-202ENST00000413872 TP53I11O14683 189 aa16.71■□□□□ 0.26
PHRF1-202ENST00000413872 CPNE3O75131 537 aaKnown RBP16.71■□□□□ 0.26
PHRF1-202ENST00000413872 ARCN1P48444 511 aaKnown RBP16.71■□□□□ 0.26
PHRF1-202ENST00000413872 SMSP52788 366 aa16.71■□□□□ 0.26
PHRF1-202ENST00000413872 TCF7L1Q9HCS4 588 aa16.71■□□□□ 0.26
PHRF1-202ENST00000413872 WBP11Q9Y2W2 641 aaKnown RBP16.71■□□□□ 0.26
PHRF1-202ENST00000413872 SAGE2PA6NJ88 616 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 AIREO43918 545 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 ADRB3P13945 408 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 UQCRC2P22695 453 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 CD70P32970 193 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 BMP8BP34820 402 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 RPA4Q13156 261 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 TMEM35AQ53FP2 167 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 REEP3Q6NUK4 255 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 BMP8AQ7Z5Y6 402 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 MMABQ96EY8 250 aaPredicted RBP16.7■□□□□ 0.26
PHRF1-202ENST00000413872 CA14Q9ULX7 337 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 ING4Q9UNL4 249 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 PKD1L3Q7Z443 1732 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 ANXA2P2A6NMY6 339 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 BTN3A3O00478 584 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 ANXA2P07355 339 aaKnown RBP16.7■□□□□ 0.26
PHRF1-202ENST00000413872 MTHFD1P11586 935 aaKnown RBP16.7■□□□□ 0.26
PHRF1-202ENST00000413872 STEAP4Q687X5 459 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 NANOGNBQ7Z5D8 188 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 AMIGO1Q86WK6 493 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 RASGEF1AQ8N9B8 481 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 NFKBIDQ8NI38 313 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 GRHL3Q8TE85 626 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 C11orf24Q96F05 449 aaPredicted RBP16.7■□□□□ 0.26
PHRF1-202ENST00000413872 TRMT2BQ96GJ1 504 aaKnown RBP16.7■□□□□ 0.26
PHRF1-202ENST00000413872 GNB5O14775 395 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 TNFRSF21O75509 655 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 MR1Q95460 341 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 YTHDF1Q9BYJ9 559 aaKnown RBP16.7■□□□□ 0.26
PHRF1-202ENST00000413872 PCDHAC1Q9H158 963 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 ADAM7Q9H2U9 754 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 GPRC5BQ9NZH0 403 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 SLC7A8Q9UHI5 535 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 IFT52Q9Y366 437 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 ZNF41P51814 821 aaPredicted RBP16.7■□□□□ 0.26
PHRF1-202ENST00000413872 PHOSPHO1Q8TCT1 267 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 FCRL3Q96P31 734 aaPredicted RBP16.7■□□□□ 0.26
PHRF1-202ENST00000413872 KAT8Q9H7Z6 458 aaKnown RBP16.7■□□□□ 0.26
PHRF1-202ENST00000413872 TRPV5Q9NQA5 729 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 PADI2Q9Y2J8 665 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 MYH13Q9UKX3 1938 aa16.7■□□□□ 0.26
PHRF1-202ENST00000413872 RFPL1O75677 317 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 SRCP12931 536 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 EPCAMP16422 314 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 FPR1P21462 350 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 VSX2P58304 361 aaPredicted RBP16.69■□□□□ 0.26
PHRF1-202ENST00000413872 NOXRED1Q6NXP6 359 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 PARP8Q8N3A8 854 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 KLHL36Q8N4N3 616 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 G6PC3Q9BUM1 346 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 C6orf47O95873 294 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 JUPP14923 745 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 GMFBP60983 142 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 PUM1Q14671 1186 aaKnown RBP eCLIP16.69■□□□□ 0.262e-8■■□□□ 12.1
PHRF1-202ENST00000413872 PERM1Q5SV97 790 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 ZNF550Q7Z398 422 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 CBARPQ8N350 705 aaPredicted RBP16.69■□□□□ 0.26
PHRF1-202ENST00000413872 BBS10Q8TAM1 723 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 RTP4Q96DX8 246 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 PYURFQ96I23 114 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 MGME1Q9BQP7 344 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 PEX16Q9Y5Y5 336 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 OR6C74A6NCV1 312 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 F7P08709 466 aaPredicted RBP16.69■□□□□ 0.26
PHRF1-202ENST00000413872 RNH1P13489 461 aaKnown RBP16.69■□□□□ 0.26
PHRF1-202ENST00000413872 POU6F2P78424 691 aaPredicted RBP16.69■□□□□ 0.26
PHRF1-202ENST00000413872 NIPAL4Q0D2K0 466 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 IL18Q14116 193 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 PON2Q15165 354 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 KCTD21Q4G0X4 260 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 C6orf136Q5SQH8 315 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 PLXDC1Q8IUK5 500 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 TMEM234Q8WY98 164 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 OR8D2Q9GZM6 311 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms