RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 RFX5P48382 616 aaPredicted RBP12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 MLLT1Q03111 559 aaPredicted RBP12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 SLC1A5Q15758 541 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 ZNF829Q3KNS6 432 aaPredicted RBP12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 SLC44A1Q8WWI5 657 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 CPT1BQ92523 772 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 MYOCQ99972 504 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 WDR77Q9BQA1 342 aaPredicted RBP12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 DUSP26Q9BV47 211 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 PAQR5Q9NXK6 330 aaPredicted RBP12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 CHD2O14647 1828 aaKnown RBP12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 PIGRP01833 764 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 IKBKEQ14164 716 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 KANK2Q63ZY3 851 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 KIAA0895Q8NCT3 520 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 NEIL3Q8TAT5 605 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 FAM151AQ8WW52 585 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 EFCAB11Q9BUY7 163 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 FAIMQ9NVQ4 179 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 ZNF891A8MT65 544 aaPredicted RBP12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 INMT-MINDY4F8WBC2 141 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 FADS1O60427 444 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 OXSR1O95747 527 aaPredicted RBP12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 PRKACBP22694 351 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 RAB7AP51149 207 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 C4orf17Q53FE4 359 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 ANKRD23Q86SG2 305 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 NSMAFQ92636 917 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 HOXB13Q92826 284 aaPredicted RBP12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 MMP27Q9H306 513 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 GTF2IRD1Q9UHL9 959 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 SALL1Q9NSC2 1324 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 FRKP42685 505 aaPredicted RBP12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 LSSP48449 732 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 ERVK-16P61578 105 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 OR2T5Q6IEZ7 315 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 FAM46DQ8NEK8 389 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 OR2T29Q8NH02 315 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 ZNF420Q8TAQ5 688 aaPredicted RBP12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 TMEM125Q96AQ2 219 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 FOLH1BQ9HBA9 442 aa12.96□□□□□ -0.34
CCDC88A-204ENST00000413716 OR7A17O14581 309 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 CHEK1O14757 476 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 IDO2Q6ZQW0 420 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 OR4K2Q8NGD2 314 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 RGMAQ96B86 450 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 ZNF559Q9BR84 538 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 E9PI62 339 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 RNASEH2AO75792 299 aaKnown RBP12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 CD34P28906 385 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 TROAPQ12815 778 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 EPHA10Q5JZY3 1008 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 NATD1Q8N6N6 113 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 XPNPEP1Q9NQW7 623 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 OAZ3Q9UMX2 235 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 SC5DO75845 299 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 SLC2A1P11166 492 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 SLC6A6P31641 620 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 LASP1Q14847 261 aaKnown RBP12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 WSCD1Q658N2 575 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 REPS2Q8NFH8 660 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 ZDHHC1Q8WTX9 485 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 GCDHQ92947 438 aaPredicted RBP12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 MSI2Q96DH6 328 aaKnown RBP12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 TMEM9Q9P0T7 183 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 USP42Q9H9J4 1324 aaKnown RBP12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 CSF2P04141 144 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 EN1Q05925 392 aaPredicted RBP12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 DNMT3AQ9Y6K1 912 aaPredicted RBP12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 BLOC1S5-TXNDC5H3BN57 136 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 TSFMP43897 325 aaKnown RBP12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 NPBWR1P48145 328 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 TMEM35AQ53FP2 167 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 SLC22A10Q63ZE4 541 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 CHTF18Q8WVB6 975 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 ZNF681Q96N22 645 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 ANKRD34BA5PLL1 514 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 PIAS1O75925 651 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 LPLP06858 475 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 CDKN1CP49918 316 aaPredicted RBP12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 GPX6P59796 221 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 NADK2Q4G0N4 442 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 TMEM41BQ5BJD5 291 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 OR4K17Q8NGC6 315 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 MAPK15Q8TD08 544 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 UBXN10Q96LJ8 280 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 LURAP1Q96LR2 239 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 KCNJ16Q9NPI9 418 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 PCDHB11Q9Y5F2 797 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 hCG_1818297A0A087WSY0 165 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 ACKR2O00590 384 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 GJB6O95452 261 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 ADAP00813 363 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 ADH7P40394 386 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 HSPA7P48741 367 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 ACTA2P62736 377 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 ACTG2P63267 376 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 MALLQ13021 153 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 PDE12Q6L8Q7 609 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms