RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 B3GNT8Q7Z7M8 397 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 ZZZ3Q8IYH5 903 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 CPXM2Q8N436 756 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 VOPP1Q96AW1 172 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 ZNF641Q96N77 438 aaPredicted RBP12.88□□□□□ -0.35
VPS54-203ENST00000409558 RDH14Q9HBH5 336 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 CAPN10Q9HC96 672 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 TIMMDC1Q9NPL8 285 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 TRPC4Q9UBN4 977 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 KCNK6Q9Y257 313 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 RUVBL1Q9Y265 456 aaKnown RBP12.88□□□□□ -0.35
VPS54-203ENST00000409558 ZNF510Q9Y2H8 683 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 SCN3AQ9NY46 2000 aa12.88□□□□□ -0.35
VPS54-203ENST00000409558 CCNDBP1O95273 360 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 C8orf89P0DMQ9 161 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 ADH5P11766 374 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 C6P13671 934 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 PPM1FP49593 454 aaPredicted RBP12.87□□□□□ -0.35
VPS54-203ENST00000409558 HNMTP50135 292 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 SH3BGRP55822 239 aaPredicted RBP12.87□□□□□ -0.35
VPS54-203ENST00000409558 DNASE1L3Q13609 305 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 TMEM31Q5JXX7 168 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 ATG9BQ674R7 924 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 CAPN13Q6MZZ7 669 aaPredicted RBP12.87□□□□□ -0.35
VPS54-203ENST00000409558 PTOV1Q86YD1 416 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 NPAS3Q8IXF0 933 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 DDHD1Q8NEL9 900 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 ARSGQ96EG1 525 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 MCCC1Q96RQ3 725 aaPredicted RBP12.87□□□□□ -0.35
VPS54-203ENST00000409558 C6orf62Q9GZU0 229 aaPredicted RBP12.87□□□□□ -0.35
VPS54-203ENST00000409558 SLC6A17Q9H1V8 727 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 RAD18Q9NS91 495 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 CUEDC1Q9NWM3 386 aaPredicted RBP12.87□□□□□ -0.35
VPS54-203ENST00000409558 SCN3BQ9NY72 215 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 FNDC1Q4ZHG4 1894 aaPredicted RBP12.87□□□□□ -0.35
VPS54-203ENST00000409558 ANAPC1Q9H1A4 1944 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 KCNE1BA0A087WTH5 132 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 TMEM247A6NEH6 219 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 TNFRSF11BO00300 401 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 MOSPD3O75425 235 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 FGBP02675 491 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 WNT3P56703 355 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 RPS3AP61247 264 aaKnown RBP12.87□□□□□ -0.35
VPS54-203ENST00000409558 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.87□□□□□ -0.35
VPS54-203ENST00000409558 FAM83HQ6ZRV2 1179 aaPredicted RBP12.87□□□□□ -0.35
VPS54-203ENST00000409558 TBC1D15Q8TC07 691 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 TANKQ92844 425 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 RSPRY1Q96DX4 576 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 LGR4Q9BXB1 951 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 EXOSC4Q9NPD3 245 aaKnown RBP12.87□□□□□ -0.35
VPS54-203ENST00000409558 CBSLP0DN79 551 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 CBSP35520 551 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 OPRL1P41146 370 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 SEPHS1P49903 392 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 ISL1P61371 349 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 FAM109BQ6ICB4 259 aaPredicted RBP12.87□□□□□ -0.35
VPS54-203ENST00000409558 WDR53Q7Z5U6 358 aaPredicted RBP12.87□□□□□ -0.35
VPS54-203ENST00000409558 HIPK1Q86Z02 1210 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 CHPFQ8IZ52 775 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 FRMPD3Q5JV73 1810 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 CACNA1IQ9P0X4 2223 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 GFYI3L273 518 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 CYP17A1P05093 508 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 IGFBP1P08833 259 aaPredicted RBP12.87□□□□□ -0.35
VPS54-203ENST00000409558 ACP5P13686 325 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 ZNF8P17098 575 aaPredicted RBP12.87□□□□□ -0.35
VPS54-203ENST00000409558 SLC5A12Q1EHB4 618 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 PLEKHS1Q5SXH7 462 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 LAIR2Q6ISS4 152 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 DEF8Q6ZN54 512 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 SLC5A8Q8N695 610 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 MRPL43Q8N983 215 aaKnown RBP12.87□□□□□ -0.35
VPS54-203ENST00000409558 PLEKHA8Q96JA3 519 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 ZSCAN5AQ9BUG6 496 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 ALOXE3Q9BYJ1 711 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 PLGRKTQ9HBL7 147 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 C11orf16Q9NQ32 467 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 EQTNQ9NQ60 294 aa12.87□□□□□ -0.35
VPS54-203ENST00000409558 FAM220BPB1ANY3 271 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 PTPN6P29350 595 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 MNX1P50219 401 aaPredicted RBP12.86□□□□□ -0.35
VPS54-203ENST00000409558 AP1S2P56377 157 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 TTC23LQ6PF05 361 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 LILRA6Q6PI73 481 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 USP51Q70EK9 711 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 BCDIN3DQ7Z5W3 292 aaKnown RBP12.86□□□□□ -0.35
VPS54-203ENST00000409558 ADPRHL2Q9NX46 363 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 IMPAD1Q9NX62 359 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 DEC1Q9P2X7 70 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 SLC23A2Q9UGH3 650 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 PDZK1P1A8MUH7 402 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 OCM2P0CE71 109 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 OCMP0CE72 109 aaPredicted RBP12.86□□□□□ -0.35
VPS54-203ENST00000409558 CD9P21926 228 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 HPCAL1P37235 193 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 HENMT1Q5T8I9 393 aaKnown RBP12.86□□□□□ -0.35
VPS54-203ENST00000409558 PAGE2Q7Z2X7 111 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 DGLUCYQ7Z3D6 616 aa12.86□□□□□ -0.35
VPS54-203ENST00000409558 CELF5Q8N6W0 485 aaKnown RBP12.86□□□□□ -0.35
VPS54-203ENST00000409558 ARRDC3Q96B67 414 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms