RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 STSP08842 583 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 SMIM10L2AP0DMW4 78 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 SMIM10L2BP0DMW5 78 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 TACR2P21452 398 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 MSR1P21757 451 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 CORO1AP31146 461 aaKnown RBP11.5□□□□□ -0.57
SYNPO-202ENST00000394243 HTR7P34969 479 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 TBC1D15Q8TC07 691 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 GAL3ST4Q96RP7 486 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 DPEP3Q9H4B8 488 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 ZNF334Q9HCZ1 680 aaPredicted RBP11.5□□□□□ -0.57
SYNPO-202ENST00000394243 ASF1BQ9NVP2 202 aa11.5□□□□□ -0.57
SYNPO-202ENST00000394243 CD8B2A6NJW9 211 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 NEDD8-MDP1E9PL57 170 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 TXNL1O43396 289 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 ZNF254O75437 659 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 CD8BP10966 210 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 IL12BP29460 328 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 MPIP34949 423 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 C1QTNF8P60827 252 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 AKR1C8PQ5T2L2 129 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 GLIS1Q8NBF1 620 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 SCGB1C1Q8TD33 95 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 STK35Q8TDR2 534 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 SLC45A3Q96JT2 553 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 WRAP53Q9BUR4 548 aaKnown RBP11.49□□□□□ -0.57
SYNPO-202ENST00000394243 ASAH2Q9NR71 780 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 FBXW11Q9UKB1 542 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 VILLO15195 856 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 IL1R2P27930 398 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 ADH6P28332 368 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 AGTR1P30556 359 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 NSG1P42857 185 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 PLPPR4Q7Z2D5 763 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 NIPA2Q8N8Q9 360 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 CD180Q99467 661 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 MKRN2Q9H000 416 aaKnown RBP11.49□□□□□ -0.57
SYNPO-202ENST00000394243 MMP28Q9H239 520 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 FBRSL1Q9HCM7 1045 aaKnown RBP11.49□□□□□ -0.57
SYNPO-202ENST00000394243 CLDN4O14493 209 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 SGCEO43556 437 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 UPK1BO75841 260 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 CSTBP04080 98 aaKnown RBP11.49□□□□□ -0.57
SYNPO-202ENST00000394243 CAPN3P20807 821 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 UGT2B10P36537 528 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 DGKGP49619 791 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 NDST2P52849 883 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 EVX2Q03828 476 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 PON3Q15166 354 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 NDUFA9Q16795 377 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 CYP27C1Q4G0S4 372 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 SLC35F1Q5T1Q4 408 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 APOBEC3HQ6NTF7 200 aaKnown RBP11.49□□□□□ -0.57
SYNPO-202ENST00000394243 OR4F6Q8NGB9 312 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 OR4K3Q96R72 315 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 SLC5A7Q9GZV3 580 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 ZFP37Q9Y6Q3 630 aaPredicted RBP11.49□□□□□ -0.57
SYNPO-202ENST00000394243 PCCBP05166 539 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 FGF3P11487 239 aaPredicted RBP11.49□□□□□ -0.57
SYNPO-202ENST00000394243 ALAS2P22557 587 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 NOMO2Q5JPE7 1267 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 DCDC5Q6ZRR9 648 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 HFE2Q6ZVN8 426 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 C1orf127Q8N9H9 656 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 DISP2A7MBM2 1401 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 HMX3A6NHT5 357 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 SPATA31C2B4DYI2 1134 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 H3BMQ9 156 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 FMO6PO60774 539 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 PQBP1O60828 265 aaKnown RBP11.49□□□□□ -0.57
SYNPO-202ENST00000394243 IL32P24001 234 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 MAPK3P27361 379 aaPredicted RBP11.49□□□□□ -0.57
SYNPO-202ENST00000394243 HNRNPFP52597 415 aaKnown RBP11.49□□□□□ -0.57
SYNPO-202ENST00000394243 SREBF2Q12772 1141 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 CDK10Q15131 360 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 ZNF674Q2M3X9 581 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 TMEM220Q6QAJ8 160 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 BEND4Q6ZU67 534 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 SPATC1Q76KD6 591 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 ASRGL1Q7L266 308 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 GTPBP8Q8N3Z3 284 aaPredicted RBP11.49□□□□□ -0.57
SYNPO-202ENST00000394243 OR5T2Q8NGG2 359 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 SNAPC3Q92966 411 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 AKT1S1Q96B36 256 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 PRICKLE1Q96MT3 831 aaPredicted RBP11.49□□□□□ -0.57
SYNPO-202ENST00000394243 COG8Q96MW5 612 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 MTFR1LQ9H019 292 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 APOBEC3GQ9HC16 384 aaKnown RBP11.49□□□□□ -0.57
SYNPO-202ENST00000394243 ADAP2Q9NPF8 381 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 PCDHGB2Q9Y5G2 931 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 USP32Q8NFA0 1604 aa11.49□□□□□ -0.57
SYNPO-202ENST00000394243 GRM6O15303 877 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 TLX3O43711 291 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 SPDEFO95238 335 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 KLK1P06870 262 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 MRPL3P09001 348 aaKnown RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 SLC35G6P0C7Q6 338 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 SLC6A9P48067 706 aa11.48□□□□□ -0.57
SYNPO-202ENST00000394243 MECP2P51608 486 aaKnown RBP11.48□□□□□ -0.57
SYNPO-202ENST00000394243 MRPS6P82932 125 aaKnown RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms