RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 CD47Q08722 323 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 NDUFA9Q16795 377 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 XKR4Q5GH76 650 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 C1orf220Q5T0J3 134 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 WDTC1Q8N5D0 677 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 THAP6Q8TBB0 222 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 GAB3Q8WWW8 586 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 RFT1Q96AA3 541 aa18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 TRMT61BQ9BVS5 477 aaKnown RBP18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 CUEDC1Q9NWM3 386 aaPredicted RBP18.93■□□□□ 0.62
CCDC88B-202ENST00000356786 ELOA3DA6NLF2 546 aaPredicted RBP18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 USP2O75604 605 aaPredicted RBP18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 ADH1AP07327 375 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 OR3A3P47888 321 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 OR3A2P47893 321 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 ZNF280AP59817 542 aaPredicted RBP18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 SLC10A2Q12908 348 aaPredicted RBP18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 ELOA3BQ3SY89 546 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 SCGB2B2Q4G0G5 96 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 ANKRD26P1Q6NSI1 321 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 ELOA3Q8NG57 546 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 C15orf40Q8WUR7 153 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 DUOX1Q9NRD9 1551 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 CENPBD1B2RD01 187 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 RBMXL2O75526 392 aaKnown RBP18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 MATN4O95460 622 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 EDNRAP25101 427 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 NR4A2P43354 598 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 VLDLRP98155 873 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 EIPR1Q53HC9 387 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 TMEM151AQ8N4L1 468 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 NEIL3Q8TAT5 605 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 ZCCHC10Q8TBK6 192 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 GPR151Q8TDV0 419 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 C12orf66Q96MD2 445 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 KCNH6Q9H252 994 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 PSMD9O00233 223 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 RAB36O95755 333 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 SLC35G6P0C7Q6 338 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 FOSL2P15408 326 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 S100A2P29034 98 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 VMACQ2NL98 169 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 KIAA1324Q6UXG2 1013 aaKnown RBP18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 NUDT13Q86X67 352 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 B3GNT4Q9C0J1 378 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 KCNK13Q9HB14 408 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 PCDHGB6Q9Y5F9 930 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 STYXL1Q9Y6J8 313 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 DUXAA6NLW8 204 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 GBAP04062 536 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 DDX6P26196 483 aaKnown RBP eCLIP18.92■□□□□ 0.622e-6■■■■■ 38.4
CCDC88B-202ENST00000356786 SNRPD2P62316 118 aaKnown RBP18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 DSG2Q14126 1118 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 SCRN2Q96FV2 425 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 ZNF778Q96MU6 729 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 ABCG5Q9H222 651 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 PLEKHA1Q9HB21 404 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 HMX1Q9NP08 348 aaPredicted RBP18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 HCN3Q9P1Z3 774 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 MRTO4Q9UKD2 239 aaKnown RBP18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 C5P01031 1676 aa18.92■□□□□ 0.62
CCDC88B-202ENST00000356786 SMAD9O15198 467 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 SP2Q02086 613 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 SPHARQ15513 63 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 PLCZ1Q86YW0 608 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 RBM18Q96H35 190 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 RNF39Q9H2S5 420 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 MRM3Q9HC36 420 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 FNIP2Q9P278 1114 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 CPQQ9Y646 472 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 ALS2Q96Q42 1657 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 LRRC72A6NJI9 287 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 ZNF701M0R085 212 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 CAPN5O15484 640 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 LHCGRP22888 699 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 PCBP2Q15366 365 aaKnown RBP eCLIP18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 GRK1Q15835 563 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 CYP27C1Q4G0S4 372 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 HSDL2Q6YN16 418 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 CHST9Q7L1S5 443 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 ZSWIM9Q86XI8 627 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 ARL14EPQ8N8R7 260 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 OR4K1Q8NGD4 311 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 KCNJ9Q92806 393 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 CMTM7Q96FZ5 175 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 XKR8Q9H6D3 395 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 RANBP3Q9H6Z4 567 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 DNAJC15Q9Y5T4 150 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 CAPN14A8MX76 684 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 ZNF3P17036 446 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 CMPK1P30085 196 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 KCNC4Q03721 635 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 NIPAL4Q0D2K0 466 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 GINS1Q14691 196 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 ATXN7L3Q14CW9 347 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 SLC25A25Q6KCM7 469 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 FUBP3Q96I24 572 aaKnown RBP eCLIP18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 EXO5Q9H790 373 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 SRRDQ9UH36 339 aa18.91■□□□□ 0.62
CCDC88B-202ENST00000356786 MGAT4BQ9UQ53 548 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms