RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 KIAA1614Q5VZ46 1190 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 TCEAL6Q6IPX3 200 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 GTF2H5Q6ZYL4 71 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 ADAM32Q8TC27 787 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 TMBIM1Q969X1 311 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 FKBP10Q96AY3 582 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 NEURL2Q9BR09 285 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 C20orf27Q9GZN8 174 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 PCDHB16Q9NRJ7 776 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 FAM120CQ9NX05 1096 aaKnown RBP6.22□□□□□ -1.41
VPS35-201ENST00000299138 A0A1B0GVG6 124 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 ANKDD1BA6NHY2 528 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 CFHP08603 1231 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 CBSLP0DN79 551 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 PKMP14618 531 aaKnown RBP6.22□□□□□ -1.41
VPS35-201ENST00000299138 CBSP35520 551 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 DDOSTP39656 456 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 SLC1A2P43004 574 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 CLK3P49761 638 aaKnown RBP6.22□□□□□ -1.41
VPS35-201ENST00000299138 PRMT2P55345 433 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 SIM2Q14190 667 aaPredicted RBP6.22□□□□□ -1.41
VPS35-201ENST00000299138 ZNF792Q3KQV3 632 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 ARHGAP11BQ3KRB8 267 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 KIAA0319Q5VV43 1072 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 OR2T5Q6IEZ7 315 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 MSANTD2Q6P1R3 559 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 YAF2Q8IY57 180 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 OR2T29Q8NH02 315 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 UBTD2Q8WUN7 234 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 C15orf40Q8WUR7 153 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 CCDC107Q8WV48 283 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 RPL3LQ92901 407 aaKnown RBP6.22□□□□□ -1.41
VPS35-201ENST00000299138 ZNF486Q96H40 463 aaPredicted RBP6.22□□□□□ -1.41
VPS35-201ENST00000299138 ACBD6Q9BR61 282 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 TTYH2Q9BSA4 534 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 FUNDC2Q9BWH2 189 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 PPA2Q9H2U2 334 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 GSTO2Q9H4Y5 243 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 TMEM185BQ9H7F4 350 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 ADARB2Q9NS39 739 aaKnown RBP6.22□□□□□ -1.41
VPS35-201ENST00000299138 PCDHGA8Q9Y5G5 932 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 THSD7AQ9UPZ6 1657 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 EFCAB9A8MZ26 197 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 SLC1A7O00341 560 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 MSI1O43347 362 aaKnown RBP6.21□□□□□ -1.41
VPS35-201ENST00000299138 IFNGP01579 166 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 SPAM1P38567 509 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 ETV6P41212 452 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 MTHFRP42898 656 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 ADIGQ0VDE8 80 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 GPRC6AQ5T6X5 926 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 SPATA2LQ8IUW3 424 aaPredicted RBP6.21□□□□□ -1.41
VPS35-201ENST00000299138 SLC15A4Q8N697 577 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 TXNDC5Q8NBS9 432 aaKnown RBP6.21□□□□□ -1.41
VPS35-201ENST00000299138 AP2M1Q96CW1 435 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 RADILQ96JH8 1075 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 RIPOR3Q96MK2 946 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 TEFMQ96QE5 360 aaKnown RBP6.21□□□□□ -1.41
VPS35-201ENST00000299138 ALPK1Q96QP1 1244 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 PITX2Q99697 317 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 OMDQ99983 421 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 FAM126AQ9BYI3 521 aaPredicted RBP6.21□□□□□ -1.41
VPS35-201ENST00000299138 RPS10P5Q9NQ39 176 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 GLS2Q9UI32 602 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 ST3GAL5Q9UNP4 418 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 PCDHGA1Q9Y5H4 931 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 WNK3Q9BYP7 1800 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 AGAP5A6NIR3 686 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 PDCD5O14737 125 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 KLK8O60259 260 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 SLC25A12O75746 678 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 TFPTP0C1Z6 253 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 CCNYL3P0C7X3 344 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 GSTT2P0CG29 244 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 OR3A3P47888 321 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 OR3A2P47893 321 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 RORCP51449 518 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 STC1P52823 247 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 NKX2-5P52952 324 aaPredicted RBP6.21□□□□□ -1.41
VPS35-201ENST00000299138 FGL1Q08830 312 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 C1QTNF12Q5T7M4 302 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 MOB1BQ7L9L4 216 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 CILP2Q8IUL8 1156 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 SLC41A1Q8IVJ1 513 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 BOLLQ8N9W6 283 aaKnown RBP6.21□□□□□ -1.41
VPS35-201ENST00000299138 CHDHQ8NE62 594 aaPredicted RBP6.21□□□□□ -1.41
VPS35-201ENST00000299138 OR4Q3Q8NH05 313 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 SEPT5Q99719 369 aaPredicted RBP6.21□□□□□ -1.41
VPS35-201ENST00000299138 AARSD1Q9BTE6 412 aaKnown RBP6.21□□□□□ -1.41
VPS35-201ENST00000299138 SAMD10Q9BYL1 202 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 DCSTAMPQ9H295 470 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 SMOC2Q9H3U7 446 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 FAM118AQ9NWS6 357 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 LYARQ9NX58 379 aaKnown RBP6.21□□□□□ -1.41
VPS35-201ENST00000299138 KLF15Q9UIH9 416 aa6.21□□□□□ -1.41
VPS35-201ENST00000299138 HMX3A6NHT5 357 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 CXCR6O00574 342 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 DLGAP1O14490 977 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 IRAK2O43187 625 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 CHST10O43529 356 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms