RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 SIGLEC11Q96RL6 698 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 GPR63Q9BZJ6 419 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 CSNK1G1Q9HCP0 422 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 C12orf4Q9NQ89 552 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 NUDT4Q9NZJ9 180 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 RPS6KA6Q9UK32 745 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 FZD4Q9ULV1 537 aa13.86□□□□□ -0.19
SDC1-201ENST00000254351 TRIP12Q14669 1992 aaPredicted RBP13.85□□□□□ -0.19
SDC1-201ENST00000254351 MAGEB17A8MXT2 336 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 I3L521 148 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 PLOD3O60568 738 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 CSF3P09919 207 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 HOXB8P17481 243 aaPredicted RBP13.85□□□□□ -0.19
SDC1-201ENST00000254351 MAN2A2P49641 1150 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 MAPK12P53778 367 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 WDR53Q7Z5U6 358 aaPredicted RBP13.85□□□□□ -0.19
SDC1-201ENST00000254351 PTOV1Q86YD1 416 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 ADGRG2Q8IZP9 1017 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 GPR156Q8NFN8 814 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 MSANTD3Q96H12 275 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 RNF121Q9H920 327 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 GALNT9Q9HCQ5 603 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 ARL15Q9NXU5 204 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 TNPO3Q9Y5L0 923 aaKnown RBP13.85□□□□□ -0.19
SDC1-201ENST00000254351 RAI2Q9Y5P3 530 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 SLC28A1O00337 649 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 WNT9AO14904 365 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 PCDH7O60245 1069 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 ODC1P11926 461 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 PTPN6P29350 595 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 GKP32189 559 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 ATN1P54259 1190 aaPredicted RBP13.85□□□□□ -0.19
SDC1-201ENST00000254351 TSTA3Q13630 321 aaPredicted RBP13.85□□□□□ -0.19
SDC1-201ENST00000254351 FAM205BPQ63HN1 556 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 GLRX5Q86SX6 157 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 TMEM86AQ8N2M4 240 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 OR6C4Q8NGE1 309 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 OR5AK3PQ8NH89 298 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 CCDC32Q9BV29 185 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 C1QTNF3Q9BXJ4 246 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 TRIM45Q9H8W5 580 aaPredicted RBP13.85□□□□□ -0.19
SDC1-201ENST00000254351 FAM105AQ9NUU6 356 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 SH3BP4Q9P0V3 963 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 ALG5Q9Y673 324 aa13.85□□□□□ -0.19
SDC1-201ENST00000254351 TMEM88BA6NKF7 163 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 LAMP1P11279 417 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 ZNF250P15622 560 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 CD72P21854 359 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 CNR2P34972 360 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 RORCP51449 518 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 FCHO2Q0JRZ9 810 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 LRRC74AQ0VAA2 488 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 MAD2L1Q13257 205 aaPredicted RBP13.84□□□□□ -0.19
SDC1-201ENST00000254351 PTGES3Q15185 160 aaKnown RBP13.84□□□□□ -0.19
SDC1-201ENST00000254351 ADNP2Q6IQ32 1131 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 B3GLCTQ6Y288 498 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 ADAMTSL2Q86TH1 951 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 TMC8Q8IU68 726 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 NAGSQ8N159 534 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 PIH1D2Q8WWB5 315 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 TM6SF2Q9BZW4 377 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 POLR2J2Q9GZM3 115 aaKnown RBP13.84□□□□□ -0.19
SDC1-201ENST00000254351 SRRQ9GZT4 340 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 UBA2Q9UBT2 640 aaPredicted RBP13.84□□□□□ -0.19
SDC1-201ENST00000254351 ACSL6Q9UKU0 697 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 ST3GAL5Q9UNP4 418 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 RABL2BQ9UNT1 228 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 PCDHGB2Q9Y5G2 931 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 BTN3A3O00478 584 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 TPST2O60704 377 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 EVI2BP34910 448 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 IL10RBQ08334 325 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 CDONQ4KMG0 1287 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 TOR2AQ5JU69 321 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 ATCAYQ86WG3 371 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 DENND1CQ8IV53 801 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 FAM126AQ9BYI3 521 aaPredicted RBP13.84□□□□□ -0.19
SDC1-201ENST00000254351 CD244Q9BZW8 370 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 FAM83DQ9H4H8 585 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 ZNF556Q9HAH1 456 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 TPT1P8Q9HAU6 139 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 TMEM248Q9NWD8 314 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 GRIP1Q9Y3R0 1128 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 PDCD11Q14690 1871 aaKnown RBP13.84□□□□□ -0.19
SDC1-201ENST00000254351 SLC35F4A4IF30 521 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 H3BN98 237 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 ENTPD6O75354 484 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 NCR1O76036 304 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 PRLP01236 227 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 HLA-EP13747 358 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 MLLT3P42568 568 aaPredicted RBP13.84□□□□□ -0.19
SDC1-201ENST00000254351 CRYBA2P53672 197 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 POU4F3Q15319 338 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 DUSP7Q16829 419 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 ATXN7L2Q5T6C5 722 aaPredicted RBP13.84□□□□□ -0.19
SDC1-201ENST00000254351 FAHD1Q6P587 224 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 MEX3DQ86XN8 651 aaKnown RBP13.84□□□□□ -0.19
SDC1-201ENST00000254351 RASSF5Q8WWW0 418 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 KCNJ9Q92806 393 aa13.84□□□□□ -0.19
SDC1-201ENST00000254351 DACT3Q96B18 629 aaPredicted RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms