RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 ATCAYQ86WG3 371 aa16.78■□□□□ 0.28
PNKP-230ENST00000638016 CCDC25Q86WR0 208 aa16.78■□□□□ 0.28
PNKP-230ENST00000638016 CLEC18CQ8NCF0 446 aa16.78■□□□□ 0.28
PNKP-230ENST00000638016 ABHD11Q8NFV4 315 aa16.78■□□□□ 0.28
PNKP-230ENST00000638016 OR5T3Q8NGG3 340 aa16.78■□□□□ 0.28
PNKP-230ENST00000638016 SLC13A3Q8WWT9 602 aa16.78■□□□□ 0.28
PNKP-230ENST00000638016 HAUS8Q9BT25 410 aa16.78■□□□□ 0.28
PNKP-230ENST00000638016 TRIM54Q9BYV2 358 aa16.78■□□□□ 0.28
PNKP-230ENST00000638016 LHPPQ9H008 270 aa16.78■□□□□ 0.28
PNKP-230ENST00000638016 GPAMQ9HCL2 828 aa16.78■□□□□ 0.28
PNKP-230ENST00000638016 ASF1BQ9NVP2 202 aa16.78■□□□□ 0.28
PNKP-230ENST00000638016 MKL2Q9ULH7 1088 aa16.78■□□□□ 0.28
PNKP-230ENST00000638016 SLC22A14Q9Y267 594 aa16.78■□□□□ 0.28
PNKP-230ENST00000638016 IGHV1-45A0A0A0MS14 117 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 NSG1A0A0A6YYJ2 146 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 PABPN1LA6NDY0 278 aaKnown RBP16.77■□□□□ 0.28
PNKP-230ENST00000638016 NCF1BA6NI72 391 aaPredicted RBP16.77■□□□□ 0.28
PNKP-230ENST00000638016 NCF1CA8MVU1 366 aaPredicted RBP16.77■□□□□ 0.28
PNKP-230ENST00000638016 NDUFS4O43181 175 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 VPS4BO75351 444 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 BMP10O95393 424 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 NSA2O95478 260 aaKnown RBP16.77■□□□□ 0.28
PNKP-230ENST00000638016 SERPIND1P05546 499 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 NCF1P14598 390 aaPredicted RBP16.77■□□□□ 0.28
PNKP-230ENST00000638016 GDF5P43026 501 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 AVPR1BP47901 424 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 CCR8P51685 355 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 OLR1P78380 273 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 UBAP2LQ14157 1087 aaKnown RBP16.77■□□□□ 0.28
PNKP-230ENST00000638016 PCOLCEQ15113 449 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 UBAP2Q5T6F2 1119 aaKnown RBP16.77■□□□□ 0.28
PNKP-230ENST00000638016 Q6ZS92 163 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 TMPRSS11BQ86T26 416 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 THOC6Q86W42 341 aaKnown RBP16.77■□□□□ 0.28
PNKP-230ENST00000638016 HPS6Q86YV9 775 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 ZADH2Q8N4Q0 377 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 NKAPQ8N5F7 415 aaKnown RBP16.77■□□□□ 0.28
PNKP-230ENST00000638016 CAMKVQ8NCB2 501 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 OR4K1Q8NGD4 311 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 OR51Q1Q8NH59 317 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 BRIX1Q8TDN6 353 aaKnown RBP16.77■□□□□ 0.28
PNKP-230ENST00000638016 SLC5A11Q8WWX8 675 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 PSMF1Q92530 271 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 THAP11Q96EK4 314 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 TGIF2Q9GZN2 237 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 VN1R1Q9GZP7 353 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 ILKAPQ9H0C8 392 aaPredicted RBP16.77■□□□□ 0.28
PNKP-230ENST00000638016 VPS4AQ9UN37 437 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 NAALAD2Q9Y3Q0 740 aa16.77■□□□□ 0.28
PNKP-230ENST00000638016 SVILO95425 2214 aa16.77■□□□□ 0.27
PNKP-230ENST00000638016 SPTAN1Q13813 2472 aaKnown RBP16.76■□□□□ 0.27
PNKP-230ENST00000638016 FAM159BA6NKW6 160 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 C4orf51C9J302 202 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 CDC123O75794 336 aaPredicted RBP16.76■□□□□ 0.27
PNKP-230ENST00000638016 IPO13O94829 963 aaKnown RBP16.76■□□□□ 0.27
PNKP-230ENST00000638016 RNF224P0DH78 156 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 VARSP26640 1264 aaKnown RBP16.76■□□□□ 0.27
PNKP-230ENST00000638016 XCR1P46094 333 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 MINDY4Q4G0A6 757 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 MFSD4BQ5TF39 518 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 AGAP7PQ5VUJ5 663 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 B3GNTL1Q67FW5 361 aaPredicted RBP16.76■□□□□ 0.27
PNKP-230ENST00000638016 C3orf62Q6ZUJ4 267 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 NDUFAF7Q7L592 441 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 SIRT6Q8N6T7 355 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 ANKRD53Q8N9V6 530 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 GALNT11Q8NCW6 608 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 CATSPER1Q8NEC5 780 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 CNDP1Q96KN2 507 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 C16orf45Q96MC5 204 aaPredicted RBP16.76■□□□□ 0.27
PNKP-230ENST00000638016 AGAP4Q96P64 663 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 RBBP8Q99708 897 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 EGFL8Q99944 293 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 WDR77Q9BQA1 342 aaPredicted RBP16.76■□□□□ 0.27
PNKP-230ENST00000638016 PTGFRNQ9P2B2 879 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 CTNNAL1Q9UBT7 734 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 NOVA2Q9UNW9 492 aaKnown RBP16.76■□□□□ 0.27
PNKP-230ENST00000638016 UTP11Q9Y3A2 253 aaKnown RBP16.76■□□□□ 0.27
PNKP-230ENST00000638016 OARD1Q9Y530 152 aa16.76■□□□□ 0.27
PNKP-230ENST00000638016 TRBC2A0A5B9 178 aa16.75■□□□□ 0.27
PNKP-230ENST00000638016 H0YIG0 161 aa16.75■□□□□ 0.27
PNKP-230ENST00000638016 EIF3HO15372 352 aaKnown RBP eCLIP16.75■□□□□ 0.27
PNKP-230ENST00000638016 SEC24DO94855 1032 aaPredicted RBP16.75■□□□□ 0.27
PNKP-230ENST00000638016 F10P00742 488 aa16.75■□□□□ 0.27
PNKP-230ENST00000638016 SLC35G6P0C7Q6 338 aa16.75■□□□□ 0.27
PNKP-230ENST00000638016 PRR35P0CG20 571 aa16.75■□□□□ 0.27
PNKP-230ENST00000638016 CXCR2P25025 360 aa16.75■□□□□ 0.27
PNKP-230ENST00000638016 GRK3P35626 688 aa16.75■□□□□ 0.27
PNKP-230ENST00000638016 HNF4AP41235 474 aa16.75■□□□□ 0.27
PNKP-230ENST00000638016 SCTRP47872 440 aa16.75■□□□□ 0.27
PNKP-230ENST00000638016 GLRBP48167 497 aa16.75■□□□□ 0.27
PNKP-230ENST00000638016 REEP5Q00765 189 aa16.75■□□□□ 0.27
PNKP-230ENST00000638016 CSHL1Q14406 222 aa16.75■□□□□ 0.27
PNKP-230ENST00000638016 USP10Q14694 798 aaKnown RBP16.75■□□□□ 0.27
PNKP-230ENST00000638016 CRB2Q5IJ48 1285 aa16.75■□□□□ 0.27
PNKP-230ENST00000638016 IRAK1BP1Q5VVH5 260 aa16.75■□□□□ 0.27
PNKP-230ENST00000638016 TMEM205Q6UW68 189 aa16.75■□□□□ 0.27
PNKP-230ENST00000638016 IGFL2Q6UWQ7 119 aa16.75■□□□□ 0.27
PNKP-230ENST00000638016 ZNF572Q7Z3I7 529 aaPredicted RBP16.75■□□□□ 0.27
PNKP-230ENST00000638016 CTAGE3PQ8IX95 158 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms