RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 OPTCQ9UBM4 332 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 LGALS13Q9UHV8 139 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 DSPP15924 2871 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 A0A0A6YYC8 382 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 C21orf140B9A014 251 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 I3L1I5 382 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 RAB40ALP0C0E4 278 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 PRKAR1AP10644 381 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 EMP3P54852 163 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 UCNP55089 124 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 PCDH1Q08174 1060 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 IL10RAQ13651 578 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 NCF4Q15080 339 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 SYT16Q17RD7 645 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 BEND6Q5SZJ8 279 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 YOD1Q5VVQ6 348 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 TMEM214Q6NUQ4 689 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 OVCH1Q7RTY7 1134 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 GOLGA7Q7Z5G4 137 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 TRABD2AQ86V40 505 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 PDSS2Q86YH6 399 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 RNF175Q8N4F7 328 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 AMER3Q8N944 861 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 OR9A4Q8NGU2 314 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 KIAA1143Q96AT1 154 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 AIF1LQ9BQI0 150 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 ROPN1BQ9BZX4 212 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 ROPN1Q9HAT0 212 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 IFT80Q9P2H3 777 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 CTSFQ9UBX1 484 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 ZFP69BQ9UJL9 534 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 PCTPQ9UKL6 214 aa13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 RALYQ9UKM9 306 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-217ENST00000598558 G3V2L1 256 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 STX16-NPEPL1H3BU86 382 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 OR7A17O14581 309 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 STX16O14662 325 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 CLGNO14967 610 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 H2AFYO75367 372 aaKnown RBP13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 CREG1O75629 220 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 PROCP04070 461 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 SERPIND1P05546 499 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 TUBBP07437 444 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 GSTA1P08263 222 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 KRT4P19013 534 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 TSPAN8P19075 237 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 AGXTP21549 392 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 CRHR1P34998 444 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 GRK3P35626 688 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 AHRP35869 848 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 EFNA3P52797 238 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 MAT1AQ00266 395 aaKnown RBP13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 IRF8Q02556 426 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 IFFO1Q0D2I5 559 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 GTF2H2Q13888 395 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 ERV3-1Q14264 604 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 MUM1Q2TAK8 710 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 UNC50Q53HI1 259 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 GARNL3Q5VVW2 1013 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 GTF2H2CQ6P1K8 395 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 PCSK4Q6UW60 755 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 TMIGD1Q6UXZ0 262 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 CAMKVQ8NCB2 501 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 OR52B6Q8NGF0 335 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 ZCCHC10Q8TBK6 192 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 NT5CQ8TCD5 201 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 PTCD3Q96EY7 689 aaKnown RBP13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 ZIM3Q96PE6 472 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 DPH2Q9BQC3 489 aaPredicted RBP13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 MESP1Q9BRJ9 268 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 CAPS2Q9BXY5 557 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 GPR87Q9BY21 358 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 EHD1Q9H4M9 534 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 NT5DC2Q9H857 520 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 ZNF304Q9HCX3 659 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 DCDC2Q9UHG0 476 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 KCND3Q9UK17 655 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 TCFL5Q9UL49 500 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 LHX6Q9UPM6 363 aa13.5□□□□□ -0.25
SHKBP1-217ENST00000598558 ITPR1Q14643 2758 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 ANKRD12Q6UB98 2062 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 ZNF891A8MT65 544 aaPredicted RBP13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 NDUFS4O43181 175 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 PLIN3O60664 434 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 SMIM24O75264 130 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 UMODP07911 640 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 RPS17P08708 135 aaKnown RBP13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 SMIM10L1P0DMW3 83 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 EPB42P16452 691 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 IL1RNP18510 177 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 HNRNPH1P31943 449 aaKnown RBP13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 HNF4AP41235 474 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 CDH13P55290 713 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 RPS15P62841 145 aaKnown RBP13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 PWP1Q13610 501 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 FAM53BQ14153 422 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 TBCCQ15814 346 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 NKG7Q16617 165 aa13.49□□□□□ -0.25
SHKBP1-217ENST00000598558 SHISA6Q6ZSJ9 500 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms