RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 KIF5AQ12840 1032 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 SFT2D3Q587I9 215 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 SEL1L2Q5TEA6 688 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 ZNF468Q5VIY5 522 aaPredicted RBP9.38□□□□□ -0.91
LIG1-209ENST00000596104 KIAA0930Q6ICG6 404 aaPredicted RBP9.38□□□□□ -0.91
LIG1-209ENST00000596104 SLC25A25Q6KCM7 469 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 CYHR1Q6ZMK1 362 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 MEX3BQ6ZN04 569 aaKnown RBP9.38□□□□□ -0.91
LIG1-209ENST00000596104 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.38□□□□□ -0.91
LIG1-209ENST00000596104 ZNF227Q86WZ6 799 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 CILP2Q8IUL8 1156 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 LGI4Q8N135 537 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 GHDCQ8N2G8 530 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 SLC5A8Q8N695 610 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 PLPP5Q8NEB5 264 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 CHTF18Q8WVB6 975 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 TM4SF19Q96DZ7 209 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 CCDC138Q96M89 665 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 LANCL2Q9NS86 450 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 ABCF3Q9NUQ8 709 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 TMEM184CQ9NVA4 438 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 KLHL42Q9P2K6 505 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 SOX13Q9UN79 622 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 DRG1Q9Y295 367 aaKnown RBP9.38□□□□□ -0.91
LIG1-209ENST00000596104 ZFHX3Q15911 3703 aa9.38□□□□□ -0.91
LIG1-209ENST00000596104 MAGEB17A8MXT2 336 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 E5RI56 91 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 CDK2AP1O14519 115 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 PFDN6O15212 129 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 NME2P1O60361 137 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 RDH16O75452 317 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 SYF2O95926 243 aaKnown RBP9.37□□□□□ -0.91
LIG1-209ENST00000596104 MPC1LP0DKB6 136 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 ABOP16442 354 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 IGFBP2P18065 325 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 NME2P22392 152 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 HRH2P25021 359 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 COILP38432 576 aaPredicted RBP9.37□□□□□ -0.91
LIG1-209ENST00000596104 ZNF75DP51815 510 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 SLC26A5P58743 744 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 RPS15AP62244 130 aaKnown RBP9.37□□□□□ -0.91
LIG1-209ENST00000596104 BASP1P80723 227 aaKnown RBP9.37□□□□□ -0.91
LIG1-209ENST00000596104 OC90Q02509 493 aaPredicted RBP9.37□□□□□ -0.91
LIG1-209ENST00000596104 CUL1Q13616 776 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 USP10Q14694 798 aaKnown RBP9.37□□□□□ -0.91
LIG1-209ENST00000596104 ABRAXAS2Q15018 415 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 RPS6KA1Q15418 735 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 NSDHLQ15738 373 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 CCNG2Q16589 344 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 SKOR2Q2VWA4 1001 aaPredicted RBP9.37□□□□□ -0.91
LIG1-209ENST00000596104 TTLL9Q3SXZ7 439 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 THEMIS2Q5TEJ8 643 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 NEPROQ6NW34 567 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 ZNF549Q6P9A3 640 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 DRICH1Q6PGQ1 229 aaPredicted RBP9.37□□□□□ -0.91
LIG1-209ENST00000596104 C3P1Q6ZMU1 363 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 TMEM139Q8IV31 216 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 HORMAD2Q8N7B1 307 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 PRELID2Q8N945 189 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 KCT2Q8NC54 265 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 MCOLN3Q8TDD5 553 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 ELP5Q8TE02 316 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 TSLPQ969D9 159 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 SDCCAG3Q96C92 435 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 THAP11Q96EK4 314 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 LPAR4Q99677 370 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 OLFM1Q99784 485 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 DESI2Q9BSY9 194 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 TRIM45Q9H8W5 580 aaPredicted RBP9.37□□□□□ -0.91
LIG1-209ENST00000596104 ANKHQ9HCJ1 492 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 LRFN1Q9P244 771 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 PPT2Q9UMR5 302 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 SH2B3Q9UQQ2 575 aa9.37□□□□□ -0.91
LIG1-209ENST00000596104 TCRBV7S3A2A0A539 114 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 ZNF860A6NHJ4 632 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 PRRG2O14669 202 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 NDC80O14777 642 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 FANCGO15287 622 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 LCMT2O60294 686 aaKnown RBP9.36□□□□□ -0.91
LIG1-209ENST00000596104 SLC25A12O75746 678 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 CDC123O75794 336 aaPredicted RBP9.36□□□□□ -0.91
LIG1-209ENST00000596104 TSPAN12O95859 305 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 F7P08709 466 aaPredicted RBP9.36□□□□□ -0.91
LIG1-209ENST00000596104 ENO3P13929 434 aaPredicted RBP9.36□□□□□ -0.91
LIG1-209ENST00000596104 ZNF24P17028 368 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 IL10P22301 178 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 PTGER1P34995 402 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 TAS2R50P59544 299 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 TBPL1P62380 186 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 CDK16Q00536 496 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 MAPKAPK3Q16644 382 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 KCTD19Q17RG1 926 aaPredicted RBP9.36□□□□□ -0.91
LIG1-209ENST00000596104 MEI1Q5TIA1 1274 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 C4orf22Q6V702 233 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 ASPGQ86U10 573 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 SLC26A11Q86WA9 606 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 RPS19BP1Q86WX3 136 aaKnown RBP9.36□□□□□ -0.91
LIG1-209ENST00000596104 KIF2BQ8N4N8 673 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 AFAP1L2Q8N4X5 818 aa9.36□□□□□ -0.91
LIG1-209ENST00000596104 CPSF7Q8N684 471 aaKnown RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms