RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CCDC22O60826 627 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 HNRNPH1P31943 449 aaKnown RBP24.01■■□□□ 1.43
SHMT1-207ENST00000580002 PIK3CBP42338 1070 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 ERVK-8P63133 956 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 CCL7P80098 99 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 HYAL2Q12891 473 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 SNAP47Q5SQN1 464 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 OGFOD2Q6N063 350 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 ZFAND4Q86XD8 727 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 MFSD9Q8NBP5 474 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 WDR48Q8TAF3 677 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 TEX37Q96LM6 180 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 PPP3R2Q96LZ3 170 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 OR2A5Q96R48 311 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 EBPLQ9BY08 206 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 BRF2Q9HAW0 419 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 PFDN4Q9NQP4 134 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 ASCC3Q8N3C0 2202 aaKnown RBP24.01■■□□□ 1.43
SHMT1-207ENST00000580002 A0A1W2PQM1 296 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 CAPN14A8MX76 684 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 C4orf51C9J302 202 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 RTCAO00442 366 aaKnown RBP24■■□□□ 1.43
SHMT1-207ENST00000580002 RSL1D1O76021 490 aaKnown RBP24■■□□□ 1.43
SHMT1-207ENST00000580002 CBX6O95503 412 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 GBAP04062 536 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 G6PDP11413 515 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 EZRP15311 586 aaKnown RBP24■■□□□ 1.43
SHMT1-207ENST00000580002 HRH2P25021 359 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 GRK3P35626 688 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 EMX2Q04743 252 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 DEFB110Q30KQ9 67 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 PAOXQ6QHF9 649 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 ZUFSPQ96AP4 578 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 CMTM7Q96FZ5 175 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 CCDC3Q9BQI4 270 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 SARGQ9BW04 601 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 MS4A8Q9BY19 250 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 TRIM33Q9UPN9 1127 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 TSC22D4Q9Y3Q8 395 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 KLK4Q9Y5K2 254 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 GPR45Q9Y5Y3 372 aa24■■□□□ 1.43
SHMT1-207ENST00000580002 A0A0G2JN53 185 aa23.99■■□□□ 1.43
SHMT1-207ENST00000580002 B3GALT4O96024 378 aa23.99■■□□□ 1.43
SHMT1-207ENST00000580002 CD59P13987 128 aa23.99■■□□□ 1.43
SHMT1-207ENST00000580002 TACR1P25103 407 aa23.99■■□□□ 1.43
SHMT1-207ENST00000580002 RAE1P78406 368 aaKnown RBP23.99■■□□□ 1.43
SHMT1-207ENST00000580002 KLF10Q13118 480 aa23.99■■□□□ 1.43
SHMT1-207ENST00000580002 UBE3DQ7Z6J8 389 aa23.99■■□□□ 1.43
SHMT1-207ENST00000580002 CPSF7Q8N684 471 aaKnown RBP23.99■■□□□ 1.43
SHMT1-207ENST00000580002 C1orf52Q8N6N3 182 aaKnown RBP23.99■■□□□ 1.43
SHMT1-207ENST00000580002 CHTF18Q8WVB6 975 aa23.99■■□□□ 1.43
SHMT1-207ENST00000580002 AIG1Q9NVV5 245 aa23.99■■□□□ 1.43
SHMT1-207ENST00000580002 AP1M2Q9Y6Q5 423 aa23.99■■□□□ 1.43
SHMT1-207ENST00000580002 A8MU76 341 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 P2RX6O15547 441 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 KLHL18O94889 574 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 ZNF883P0CG24 379 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 T-ENOLP0DO92 83 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 CKMT1AP12532 417 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 TGM1P22735 817 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 PRPH2P23942 346 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 DAB2P98082 770 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 ZNF574Q6ZN55 896 aaPredicted RBP23.98■■□□□ 1.43
SHMT1-207ENST00000580002 POU5F2Q8N7G0 328 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 C19orf47Q8N9M1 422 aaKnown RBP23.98■■□□□ 1.43
SHMT1-207ENST00000580002 CLHC1Q8NHS4 586 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 IFI44Q8TCB0 444 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 RHBDD1Q8TEB9 315 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 EDEM2Q9BV94 578 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 EPHA6Q9UF33 1036 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 AGRPO00253 132 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 GDF9O60383 454 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 HSD3B1P14060 373 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 GPX3P22352 226 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 HSD3B2P26439 372 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 ZNF33BQ06732 778 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 DEPDC1Q5TB30 811 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 SPATA19Q7Z5L4 167 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 AMER3Q8N944 861 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 C11orf24Q96F05 449 aaPredicted RBP23.98■■□□□ 1.43
SHMT1-207ENST00000580002 EGLN2Q96KS0 407 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 PITHD1Q9GZP4 211 aaPredicted RBP23.98■■□□□ 1.43
SHMT1-207ENST00000580002 ACTL8Q9H568 366 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 C1GALT1Q9NS00 363 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 STARD5Q9NSY2 213 aa23.98■■□□□ 1.43
SHMT1-207ENST00000580002 NPIPB8E9PQR5 432 aa23.97■■□□□ 1.43
SHMT1-207ENST00000580002 NDUFS4O43181 175 aa23.97■■□□□ 1.43
SHMT1-207ENST00000580002 DUX1O43812 170 aa23.97■■□□□ 1.43
SHMT1-207ENST00000580002 RPLP0P05388 317 aaKnown RBP23.97■■□□□ 1.43
SHMT1-207ENST00000580002 BCKDHAP12694 445 aa23.97■■□□□ 1.43
SHMT1-207ENST00000580002 PIK3R1P27986 724 aa23.97■■□□□ 1.43
SHMT1-207ENST00000580002 SEPHS1P49903 392 aa23.97■■□□□ 1.43
SHMT1-207ENST00000580002 UFM1P61960 85 aa23.97■■□□□ 1.43
SHMT1-207ENST00000580002 PTGR1Q14914 329 aa23.97■■□□□ 1.43
SHMT1-207ENST00000580002 SUZ12Q15022 739 aaKnown RBP23.97■■□□□ 1.43
SHMT1-207ENST00000580002 LIX1Q8N485 282 aa23.97■■□□□ 1.43
SHMT1-207ENST00000580002 KCT2Q8NC54 265 aa23.97■■□□□ 1.43
SHMT1-207ENST00000580002 SLC13A3Q8WWT9 602 aa23.97■■□□□ 1.43
SHMT1-207ENST00000580002 RAB33BQ9H082 229 aa23.97■■□□□ 1.43
SHMT1-207ENST00000580002 LHX9Q9NQ69 397 aa23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms