RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 DPM1O60762 260 aa22.66■■□□□ 1.22
SHMT1-206ENST00000579558 WDR47O94967 919 aa22.66■■□□□ 1.22
SHMT1-206ENST00000579558 WISP1O95388 367 aa22.66■■□□□ 1.22
SHMT1-206ENST00000579558 ITGA3P26006 1051 aa22.66■■□□□ 1.22
SHMT1-206ENST00000579558 EMP2P54851 167 aa22.66■■□□□ 1.22
SHMT1-206ENST00000579558 C18orf21Q32NC0 220 aaPredicted RBP22.66■■□□□ 1.22
SHMT1-206ENST00000579558 NXPE4Q6UWF7 544 aa22.66■■□□□ 1.22
SHMT1-206ENST00000579558 CMC1Q7Z7K0 106 aa22.66■■□□□ 1.22
SHMT1-206ENST00000579558 GPSM1Q86YR5 675 aa22.66■■□□□ 1.22
SHMT1-206ENST00000579558 HPS6Q86YV9 775 aa22.66■■□□□ 1.22
SHMT1-206ENST00000579558 ZNF740Q8NDX6 193 aa22.66■■□□□ 1.22
SHMT1-206ENST00000579558 OR11G2Q8NGC1 345 aa22.66■■□□□ 1.22
SHMT1-206ENST00000579558 IFT81Q8WYA0 676 aa22.66■■□□□ 1.22
SHMT1-206ENST00000579558 MRRFQ96E11 262 aaKnown RBP22.66■■□□□ 1.22
SHMT1-206ENST00000579558 TGIF2Q9GZN2 237 aa22.66■■□□□ 1.22
SHMT1-206ENST00000579558 ANKHQ9HCJ1 492 aa22.66■■□□□ 1.22
SHMT1-206ENST00000579558 NINJ2Q9NZG7 142 aa22.66■■□□□ 1.22
SHMT1-206ENST00000579558 NDUFS4O43181 175 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 ALPPP05187 535 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 SERPIND1P05546 499 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 HEXBP07686 556 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 ACPPP15309 386 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 PHBP35232 272 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 GDF5P43026 501 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 SLC6A12P48065 614 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 SOX8P57073 446 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 REEP5Q00765 189 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 OR4D1Q15615 310 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 NADK2Q4G0N4 442 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 GLE1Q53GS7 698 aaKnown RBP22.65■■□□□ 1.22
SHMT1-206ENST00000579558 ZC3H7AQ8IWR0 971 aaKnown RBP22.65■■□□□ 1.22
SHMT1-206ENST00000579558 KLHDC8AQ8IYD2 350 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 TCAIMQ8N3R3 496 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 C8orf44Q96CB5 159 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 UBXN10Q96LJ8 280 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 AIF1LQ9BQI0 150 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 MESP1Q9BRJ9 268 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 WWOXQ9NZC7 414 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 C5AR2Q9P296 337 aa22.65■■□□□ 1.22
SHMT1-206ENST00000579558 SGK494L7N484 410 aa22.64■■□□□ 1.21
SHMT1-206ENST00000579558 SLC35E2BP0CK96 405 aa22.64■■□□□ 1.21
SHMT1-206ENST00000579558 CRABP2P29373 138 aa22.64■■□□□ 1.21
SHMT1-206ENST00000579558 GMPRP36959 345 aa22.64■■□□□ 1.21
SHMT1-206ENST00000579558 SCTRP47872 440 aa22.64■■□□□ 1.21
SHMT1-206ENST00000579558 CSRP3P50461 194 aa22.64■■□□□ 1.21
SHMT1-206ENST00000579558 KIAA1191Q96A73 305 aa22.64■■□□□ 1.21
SHMT1-206ENST00000579558 MOCOSQ96EN8 888 aa22.64■■□□□ 1.21
SHMT1-206ENST00000579558 CYTH2Q99418 400 aa22.64■■□□□ 1.21
SHMT1-206ENST00000579558 FMO2Q99518 471 aa22.64■■□□□ 1.21
SHMT1-206ENST00000579558 TSPYL1Q9H0U9 437 aa22.64■■□□□ 1.21
SHMT1-206ENST00000579558 ZNF552Q9H707 407 aaPredicted RBP22.64■■□□□ 1.21
SHMT1-206ENST00000579558 HCN3Q9P1Z3 774 aa22.64■■□□□ 1.21
SHMT1-206ENST00000579558 ZFP69BQ9UJL9 534 aa22.64■■□□□ 1.21
SHMT1-206ENST00000579558 RNF112Q9ULX5 631 aa22.64■■□□□ 1.21
SHMT1-206ENST00000579558 SLC22A7Q9Y694 548 aa22.64■■□□□ 1.21
SHMT1-206ENST00000579558 SCN3AQ9NY46 2000 aa22.64■■□□□ 1.21
SHMT1-206ENST00000579558 HPP00738 406 aa22.63■■□□□ 1.21
SHMT1-206ENST00000579558 CXCR2P25025 360 aa22.63■■□□□ 1.21
SHMT1-206ENST00000579558 AHRP35869 848 aa22.63■■□□□ 1.21
SHMT1-206ENST00000579558 RGS1Q08116 209 aa22.63■■□□□ 1.21
SHMT1-206ENST00000579558 PWP1Q13610 501 aa22.63■■□□□ 1.21
SHMT1-206ENST00000579558 UAP1Q16222 522 aaPredicted RBP22.63■■□□□ 1.21
SHMT1-206ENST00000579558 CDKL4Q5MAI5 379 aa22.63■■□□□ 1.21
SHMT1-206ENST00000579558 IRAK1BP1Q5VVH5 260 aa22.63■■□□□ 1.21
SHMT1-206ENST00000579558 ATG9BQ674R7 924 aa22.63■■□□□ 1.21
SHMT1-206ENST00000579558 FAAH2Q6GMR7 532 aa22.63■■□□□ 1.21
SHMT1-206ENST00000579558 TBC1D1Q86TI0 1168 aaPredicted RBP22.63■■□□□ 1.21
SHMT1-206ENST00000579558 RELL1Q8IUW5 271 aa22.63■■□□□ 1.21
SHMT1-206ENST00000579558 PARP9Q8IXQ6 854 aa22.63■■□□□ 1.21
SHMT1-206ENST00000579558 EXT2Q93063 718 aa22.63■■□□□ 1.21
SHMT1-206ENST00000579558 TMEM79Q9BSE2 394 aa22.63■■□□□ 1.21
SHMT1-206ENST00000579558 MFRPQ9BY79 579 aa22.63■■□□□ 1.21
SHMT1-206ENST00000579558 CNOT10Q9H9A5 744 aaKnown RBP22.63■■□□□ 1.21
SHMT1-206ENST00000579558 CD274Q9NZQ7 290 aa22.63■■□□□ 1.21
SHMT1-206ENST00000579558 MKL2Q9ULH7 1088 aa22.63■■□□□ 1.21
SHMT1-206ENST00000579558 NAALAD2Q9Y3Q0 740 aa22.63■■□□□ 1.21
SHMT1-206ENST00000579558 TAPBPO15533 448 aa22.62■■□□□ 1.21
SHMT1-206ENST00000579558 RDH16O75452 317 aa22.62■■□□□ 1.21
SHMT1-206ENST00000579558 IPO13O94829 963 aaKnown RBP22.62■■□□□ 1.21
SHMT1-206ENST00000579558 KLHL18O94889 574 aa22.62■■□□□ 1.21
SHMT1-206ENST00000579558 BMP10O95393 424 aa22.62■■□□□ 1.21
SHMT1-206ENST00000579558 S100BP04271 92 aaPredicted RBP22.62■■□□□ 1.21
SHMT1-206ENST00000579558 GNAZP19086 355 aa22.62■■□□□ 1.21
SHMT1-206ENST00000579558 VARSP26640 1264 aaKnown RBP22.62■■□□□ 1.21
SHMT1-206ENST00000579558 KCNC4Q03721 635 aa22.62■■□□□ 1.21
SHMT1-206ENST00000579558 CDC16Q13042 620 aa22.62■■□□□ 1.21
SHMT1-206ENST00000579558 BMPR2Q13873 1038 aa22.62■■□□□ 1.21
SHMT1-206ENST00000579558 HERC3Q15034 1050 aa22.62■■□□□ 1.21
SHMT1-206ENST00000579558 RBBP5Q15291 538 aaKnown RBP22.62■■□□□ 1.21
SHMT1-206ENST00000579558 UBAP2Q5T6F2 1119 aaKnown RBP22.62■■□□□ 1.21
SHMT1-206ENST00000579558 MROH9Q5TGP6 573 aa22.62■■□□□ 1.21
SHMT1-206ENST00000579558 SULT1C3Q6IMI6 304 aa22.62■■□□□ 1.21
SHMT1-206ENST00000579558 PDSS2Q86YH6 399 aa22.62■■□□□ 1.21
SHMT1-206ENST00000579558 RBMXL3Q8N7X1 1067 aaKnown RBP22.62■■□□□ 1.21
SHMT1-206ENST00000579558 CEP112Q8N8E3 955 aa22.62■■□□□ 1.21
SHMT1-206ENST00000579558 OR51Q1Q8NH59 317 aa22.62■■□□□ 1.21
SHMT1-206ENST00000579558 NT5CQ8TCD5 201 aa22.62■■□□□ 1.21
SHMT1-206ENST00000579558 CDC42EP4Q9H3Q1 356 aaKnown RBP22.62■■□□□ 1.21
SHMT1-206ENST00000579558 ACSS3Q9H6R3 686 aa22.62■■□□□ 1.21
SHMT1-206ENST00000579558 ALG9Q9H6U8 611 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms