RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TRPC4Q9UBN4 977 aa14.27□□□□□ -0.13
VPS39-210ENST00000568357 PCDHGA9Q9Y5G4 932 aaKnown RBP14.27□□□□□ -0.13
VPS39-210ENST00000568357 TRBC2A0A5B9 178 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 CLEC18AA5D8T8 446 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 AGPSO00116 658 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 ACSL3O95573 720 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 VARSP26640 1264 aaKnown RBP14.26□□□□□ -0.13
VPS39-210ENST00000568357 CRABP2P29373 138 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 PHBP35232 272 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 RAPSNQ13702 412 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 BMPR2Q13873 1038 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 FBXO48Q5FWF7 155 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 MROH9Q5TGP6 573 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 NXPE4Q6UWF7 544 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 CLEC18BQ6UXF7 455 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 RAPH1Q70E73 1250 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 ISCA2Q86U28 154 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 KLHDC8AQ8IYD2 350 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 CLEC18CQ8NCF0 446 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 KIAA1191Q96A73 305 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 ESAMQ96AP7 390 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 FMO2Q99518 471 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 CRB3Q9BUF7 120 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 FUT8Q9BYC5 575 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 TSPYL1Q9H0U9 437 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 SEMA3GQ9NS98 782 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 DYRK1BQ9Y463 629 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 MAP4K5Q9Y4K4 846 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 KCNE2Q9Y6J6 123 aa14.26□□□□□ -0.13
VPS39-210ENST00000568357 ALOX12BO75342 701 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 WDR47O94967 919 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 NSA2O95478 260 aaKnown RBP14.25□□□□□ -0.13
VPS39-210ENST00000568357 IGHEP01854 428 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 IL1RNP18510 177 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 GGT5P36269 586 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 SCTRP47872 440 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 AVPR1BP47901 424 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 PGDP52209 483 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 KLRB1Q12918 225 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 UAP1Q16222 522 aaPredicted RBP14.25□□□□□ -0.13
VPS39-210ENST00000568357 ATG9BQ674R7 924 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 SLCO4C1Q6ZQN7 724 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 CEP128Q6ZU80 1094 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 PDSS2Q86YH6 399 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 GALNT16Q8N428 558 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 ANKRD53Q8N9V6 530 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 LRRN4CLQ8ND94 238 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 OR11G2Q8NGC1 345 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 ZCCHC10Q8TBK6 192 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 NXNL1Q96CM4 212 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 TMEM79Q9BSE2 394 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 TGIF2Q9GZN2 237 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 ALG9Q9H6U8 611 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 PELI2Q9HAT8 420 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 MKKSQ9NPJ1 570 aaPredicted RBP14.25□□□□□ -0.13
VPS39-210ENST00000568357 ATP13A2Q9NQ11 1180 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 ANAPC2Q9UJX6 822 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 C3orf18Q9UK00 162 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 FBXL4Q9UKA2 621 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 NFU1Q9UMS0 254 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 ACOT9Q9Y305 439 aa14.25□□□□□ -0.13
VPS39-210ENST00000568357 UTP20O75691 2785 aaKnown RBP14.25□□□□□ -0.13
VPS39-210ENST00000568357 HEATR5BQ9P2D3 2071 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 H0YIG0 161 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 SGK494L7N484 410 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 PRPF4O43172 522 aaKnown RBP eCLIP14.24□□□□□ -0.13
VPS39-210ENST00000568357 NDUFS4O43181 175 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 PRAMEF4O60810 478 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 DNAJB6O75190 326 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 SERPIND1P05546 499 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 C2P06681 752 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 LTA4HP09960 611 aaKnown RBP14.24□□□□□ -0.13
VPS39-210ENST00000568357 TFEBP19484 476 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 EFNA3P52797 238 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 EMP2P54851 167 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 SOX8P57073 446 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 REEP5Q00765 189 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 IRF9Q00978 393 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 PWP1Q13610 501 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 RBBP7Q16576 425 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 CDKL4Q5MAI5 379 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 PRAMEF9Q5VWM5 478 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 SULT1C3Q6IMI6 304 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 TMPRSS11BQ86T26 416 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 ZC3H7AQ8IWR0 971 aaKnown RBP14.24□□□□□ -0.13
VPS39-210ENST00000568357 TEX19Q8NA77 164 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 CLEC1AQ8NC01 280 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 STAG3L4Q8TBR4 150 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 C8orf44Q96CB5 159 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 PSMG3-AS1Q96PY0 264 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 EPN3Q9H201 632 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 NMRAL1Q9HBL8 299 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 SNX15Q9NRS6 342 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 GPR83Q9NYM4 423 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 CD274Q9NZQ7 290 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 ZFP69BQ9UJL9 534 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 PTBP2Q9UKA9 531 aaKnown RBP14.24□□□□□ -0.13
VPS39-210ENST00000568357 RNF112Q9ULX5 631 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 SLC22A7Q9Y694 548 aa14.24□□□□□ -0.13
VPS39-210ENST00000568357 SPTAN1Q13813 2472 aaKnown RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms