RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 SGK494L7N484 410 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 DNAJB6O75190 326 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 GUCA1CO95843 209 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 CELA2AP08217 269 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 CYC1P08574 325 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 ANXA5P08758 320 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 RNF224P0DH78 156 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 IL1RNP18510 177 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 SSTR1P30872 391 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 AVPR1BP47901 424 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 CCR8P51685 355 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 GPX6P59796 221 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 ETF1P62495 437 aaKnown RBP14.06□□□□□ -0.16
CLN3-213ENST00000565047 CDKL1Q00532 357 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 MEF2AQ02078 507 aaPredicted RBP14.06□□□□□ -0.16
CLN3-213ENST00000565047 HYAL2Q12891 473 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 MFAP5Q13361 173 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 TRADDQ15628 312 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 ISLR2Q6UXK2 745 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 ZNF572Q7Z3I7 529 aaPredicted RBP14.06□□□□□ -0.16
CLN3-213ENST00000565047 KBTBD2Q8IY47 623 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 KLHDC8AQ8IYD2 350 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 BBOF1Q8ND07 529 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 OR51Q1Q8NH59 317 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 ATL1Q8WXF7 558 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 ANP32BQ92688 251 aaKnown RBP14.06□□□□□ -0.16
CLN3-213ENST00000565047 VPS39Q96JC1 886 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 CYTH2Q99418 400 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 POPDC3Q9HBV1 291 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 MKL2Q9ULH7 1088 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 MTO1Q9Y2Z2 717 aaKnown RBP14.06□□□□□ -0.16
CLN3-213ENST00000565047 OARD1Q9Y530 152 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 EIF3HO15372 352 aaKnown RBP eCLIP14.05□□□□□ -0.16
CLN3-213ENST00000565047 HEXBP07686 556 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 SMIM10L1P0DMW3 83 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 TSFMP43897 325 aaKnown RBP14.05□□□□□ -0.16
CLN3-213ENST00000565047 SCTRP47872 440 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 SLC6A12P48065 614 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 EEF1A2Q05639 463 aaKnown RBP14.05□□□□□ -0.16
CLN3-213ENST00000565047 PWP1Q13610 501 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 EIF2S3LQ2VIR3 472 aaKnown RBP14.05□□□□□ -0.16
CLN3-213ENST00000565047 FAAH2Q6GMR7 532 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 ZDHHC24Q6UX98 284 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 MAATS1Q7Z4T9 603 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 NKAPQ8N5F7 415 aaKnown RBP14.05□□□□□ -0.16
CLN3-213ENST00000565047 ANKRD53Q8N9V6 530 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 CATSPER1Q8NEC5 780 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 DNAJB14Q8TBM8 379 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 NT5CQ8TCD5 201 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 BRIX1Q8TDN6 353 aaKnown RBP14.05□□□□□ -0.16
CLN3-213ENST00000565047 SLC5A11Q8WWX8 675 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 ALKBH8Q96BT7 664 aaKnown RBP14.05□□□□□ -0.16
CLN3-213ENST00000565047 SMIM10Q96HG1 83 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 YIPF2Q9BWQ6 316 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 TRIM54Q9BYV2 358 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 AICDAQ9GZX7 198 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 ILKAPQ9H0C8 392 aaPredicted RBP14.05□□□□□ -0.16
CLN3-213ENST00000565047 DPH5Q9H2P9 285 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 LANCL2Q9NS86 450 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 SLC22A14Q9Y267 594 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 NAALAD2Q9Y3Q0 740 aa14.05□□□□□ -0.16
CLN3-213ENST00000565047 UTP20O75691 2785 aaKnown RBP14.04□□□□□ -0.16
CLN3-213ENST00000565047 TCRBV9S1A1TA0A576 114 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 NPEPPSL1A6NEC2 478 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 WIPF3A6NGB9 483 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 FAM159BA6NKW6 160 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 NDC80O14777 642 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 RDH16O75452 317 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 SAT1P21673 171 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 CXCR2P25025 360 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 AHRP35869 848 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 REEP5Q00765 189 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 RHAGQ02094 409 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 GUCY2DQ02846 1103 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 C2orf54Q08AI8 447 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 ZNF169Q14929 603 aaPredicted RBP14.04□□□□□ -0.16
CLN3-213ENST00000565047 TSNQ15631 228 aaKnown RBP14.04□□□□□ -0.16
CLN3-213ENST00000565047 B3GNTL1Q67FW5 361 aaPredicted RBP14.04□□□□□ -0.16
CLN3-213ENST00000565047 RPUSD3Q6P087 351 aaKnown RBP14.04□□□□□ -0.16
CLN3-213ENST00000565047 LINC00696Q6ZRV3 163 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 RIPOR1Q6ZS17 1223 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 LANCL3Q6ZV70 420 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 THOC6Q86W42 341 aaKnown RBP14.04□□□□□ -0.16
CLN3-213ENST00000565047 OR5T3Q8NGG3 340 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 PYROXD1Q8WU10 500 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 HAS2Q92819 552 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 RHBDF1Q96CC6 855 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 PHACTR1Q9C0D0 580 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 SLC6A16Q9GZN6 736 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 SAYSD1Q9NPB0 183 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 RIC8BQ9NVN3 520 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 NSMCE4AQ9NXX6 385 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 HCN3Q9P1Z3 774 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 ZFP69BQ9UJL9 534 aa14.04□□□□□ -0.16
CLN3-213ENST00000565047 COPG1Q9Y678 874 aaKnown RBP14.04□□□□□ -0.16
CLN3-213ENST00000565047 BLACEA4D250 179 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 C4orf51C9J302 202 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 E2F3O00716 465 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 OR1F1O43749 312 aa14.03□□□□□ -0.16
CLN3-213ENST00000565047 GALR3O60755 368 aaPredicted RBP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms