RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 MIB2Q96AX9 1013 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 THOC3Q96J01 351 aaKnown RBP12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 TSNARE1Q96NA8 513 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 SMAD5Q99717 465 aaKnown RBP12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 SGPP1Q9BX95 441 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 TXLNGYQ9BZA5 131 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 POPDC3Q9HBV1 291 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 ZBTB20Q9HC78 741 aaPredicted RBP12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 ZNF160Q9HCG1 818 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 GPAMQ9HCL2 828 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 HCN3Q9P1Z3 774 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 PCDHGB7Q9Y5F8 929 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 FLNCQ14315 2725 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 ZNF860A6NHJ4 632 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 NCF1BA6NI72 391 aaPredicted RBP12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 NCF1CA8MVU1 366 aaPredicted RBP12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 IDSB3KWA1 339 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 SGK494L7N484 410 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 PHGDHO43175 533 aaKnown RBP12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 OR1F1O43749 312 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 JRKO75564 520 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 FAM155BO75949 473 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 WISP3O95389 354 aaPredicted RBP12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 SLU7O95391 586 aaKnown RBP12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 FAM153BP0C7A2 387 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 NCF1P14598 390 aaPredicted RBP12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 NPPBP16860 134 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 HRH2P25021 359 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 CXCR2P25025 360 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 CCR8P51685 355 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 AP1S2P56377 157 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 TSNQ15631 228 aaKnown RBP12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 ZKSCAN8Q15776 578 aaPredicted RBP12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 C18orf21Q32NC0 220 aaPredicted RBP12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 FAM153CQ494X1 144 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 CATSPEREQ5SY80 951 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 SBSNQ6UWP8 590 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 TMPRSS11BQ86T26 416 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 ASPGQ86U10 573 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 NKAPQ8N5F7 415 aaKnown RBP12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 AMER2Q8N7J2 671 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 KCT2Q8NC54 265 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 CAMKVQ8NCB2 501 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 OR56A3Q8NH54 315 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 SLC13A3Q8WWT9 602 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 ATL1Q8WXF7 558 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 FBXL8Q96CD0 374 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 MRRFQ96E11 262 aaKnown RBP12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 MVB12AQ96EY5 273 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 TSPAN17Q96FV3 270 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 VPS50Q96JG6 964 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 OR4K3Q96R72 315 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 HAUS8Q9BT25 410 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 RBCK1Q9BYM8 510 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 SPNS1Q9H2V7 528 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 ANKZF1Q9H8Y5 726 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 ENAMQ9NRM1 1142 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 CTNNAL1Q9UBT7 734 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 DYRK1BQ9Y463 629 aa12.93□□□□□ -0.34
VPS9D1-204ENST00000565023 NBPF19A0A087WUL8 3843 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 VPS4BO75351 444 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 ABHD2P08910 425 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 ENO2P09104 434 aaPredicted RBP12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 MYBL2P10244 700 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 GMPRP36959 345 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 SLC26A3P40879 764 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 UQCRFS1P47985 274 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 EMP3P54852 163 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 CSHL1Q14406 222 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 USP10Q14694 798 aaKnown RBP12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 MINDY4Q4G0A6 757 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 FBXO48Q5FWF7 155 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 LINC00696Q6ZRV3 163 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 TRMT10CQ7L0Y3 403 aaKnown RBP12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 THOC6Q86W42 341 aaKnown RBP12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 ZC3H7AQ8IWR0 971 aaKnown RBP12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 GSPT2Q8IYD1 628 aaKnown RBP12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 ZADH2Q8N4Q0 377 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 Q8NA96 180 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 ZNF740Q8NDX6 193 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 SLC5A11Q8WWX8 675 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 ANKRD7Q92527 254 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 EXT2Q93063 718 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 MOCOSQ96EN8 888 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 CNDP1Q96KN2 507 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 ILKAPQ9H0C8 392 aaPredicted RBP12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 ANKHQ9HCJ1 492 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 MKKSQ9NPJ1 570 aaPredicted RBP12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 C5AR2Q9P296 337 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 MKL2Q9ULH7 1088 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 VPS4AQ9UN37 437 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 SLC22A14Q9Y267 594 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 MAP4K5Q9Y4K4 846 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 SHANK1Q9Y566 2161 aa12.92□□□□□ -0.34
VPS9D1-204ENST00000565023 IGLV3-12A0A075B6K2 115 aa12.91□□□□□ -0.34
VPS9D1-204ENST00000565023 A0A087WUV0 522 aaPredicted RBP12.91□□□□□ -0.34
VPS9D1-204ENST00000565023 NSG1A0A0A6YYJ2 146 aa12.91□□□□□ -0.34
VPS9D1-204ENST00000565023 HMX2A2RU54 273 aa12.91□□□□□ -0.34
VPS9D1-204ENST00000565023 OR2W5A6NFC9 320 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms