RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 ZC3H12BQ5HYM0 836 aaKnown RBP9.33□□□□□ -0.92
CLK3-208ENST00000562626 LETMD1Q6P1Q0 360 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 ZCCHC23Q6ZST2 131 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 HDXQ7Z353 690 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 SYVN1Q86TM6 617 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 CSNK1A1LQ8N752 337 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 SNIP1Q8TAD8 396 aaKnown RBP9.33□□□□□ -0.92
CLK3-208ENST00000562626 ZCCHC10Q8TBK6 192 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 TRPC4APQ8TEL6 797 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 ZCCHC14Q8WYQ9 949 aaKnown RBP9.33□□□□□ -0.92
CLK3-208ENST00000562626 NKD1Q969G9 470 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 KCNA7Q96RP8 456 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 GATA5Q9BWX5 397 aaPredicted RBP9.33□□□□□ -0.92
CLK3-208ENST00000562626 ASPSCR1Q9BZE9 553 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 ACTR5Q9H9F9 607 aaPredicted RBP9.33□□□□□ -0.92
CLK3-208ENST00000562626 ENAMQ9NRM1 1142 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 THSD1Q9NS62 852 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 ARGLU1Q9NWB6 273 aaPredicted RBP9.33□□□□□ -0.92
CLK3-208ENST00000562626 OXSMQ9NWU1 459 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 TMCO1Q9UM00 188 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 PCDHB3Q9Y5E6 796 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 LAMA5O15230 3695 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 LOC101059948A0A1B0GTJ6 334 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 HYKKA2RU49 373 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 WDR91A4D1P6 747 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 CYSRT1A8MQ03 144 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.32□□□□□ -0.92
CLK3-208ENST00000562626 EFSO43281 561 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 RAD1O60671 282 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 SRPX2O60687 465 aaPredicted RBP9.32□□□□□ -0.92
CLK3-208ENST00000562626 CPNE3O75131 537 aaKnown RBP9.32□□□□□ -0.92
CLK3-208ENST00000562626 SH3BGRLO75368 114 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 SUPT7LO94864 414 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 OR4F21O95013 312 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 DHRS4L1P0CG22 281 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 TAC1P20366 129 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 HRH2P25021 359 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 ITPKBP27987 946 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 HNRNPH1P31943 449 aaKnown RBP9.32□□□□□ -0.92
CLK3-208ENST00000562626 OR1D4P47884 311 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 NAGLUP54802 743 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 FOXA1P55317 472 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 IRF8Q02556 426 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 CLCQ05315 142 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 RBBP5Q15291 538 aaKnown RBP9.32□□□□□ -0.92
CLK3-208ENST00000562626 TBCCQ15814 346 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 AGBL2Q5U5Z8 902 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 GRHL2Q6ISB3 625 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 RHBDD2Q6NTF9 364 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 FAM198BQ6UWH4 519 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 TMIGD1Q6UXZ0 262 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 ZNF517Q6ZMY9 492 aaPredicted RBP9.32□□□□□ -0.92
CLK3-208ENST00000562626 TTLL10Q6ZVT0 673 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 COX15Q7KZN9 410 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 ASPGQ86U10 573 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 PROSER1Q86XN7 944 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 PDSS2Q86YH6 399 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 LAS2Q8IYD9 372 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 DSELQ8IZU8 1212 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 LSMEM2Q8N112 164 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 CCNYL1Q8N7R7 359 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 CCDC63Q8NA47 563 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 OR4F6Q8NGB9 312 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 FGF11Q92914 225 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 PTCD3Q96EY7 689 aaKnown RBP9.32□□□□□ -0.92
CLK3-208ENST00000562626 CRELD1Q96HD1 420 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 DCBLD2Q96PD2 775 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 GBP5Q96PP8 586 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 TEFMQ96QE5 360 aaKnown RBP9.32□□□□□ -0.92
CLK3-208ENST00000562626 AIF1LQ9BQI0 150 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 SHCBP1LQ9BZQ2 653 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 B3GNT4Q9C0J1 378 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 CHST8Q9H2A9 424 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 EHD1Q9H4M9 534 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 ZNF395Q9H8N7 513 aaPredicted RBP9.32□□□□□ -0.92
CLK3-208ENST00000562626 VIPAS39Q9H9C1 493 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 FANCEQ9HB96 536 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 SSU72Q9NP77 194 aaKnown RBP9.32□□□□□ -0.92
CLK3-208ENST00000562626 FARSBQ9NSD9 589 aaKnown RBP9.32□□□□□ -0.92
CLK3-208ENST00000562626 CUTCQ9NTM9 273 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 IRAK4Q9NWZ3 460 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 SENP1Q9P0U3 644 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 SERTAD3Q9UJW9 196 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 TNPO3Q9Y5L0 923 aaKnown RBP9.32□□□□□ -0.92
CLK3-208ENST00000562626 MRPS18BQ9Y676 258 aaKnown RBP9.32□□□□□ -0.92
CLK3-208ENST00000562626 AP1M2Q9Y6Q5 423 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 CPAMD8Q8IZJ3 1885 aa9.32□□□□□ -0.92
CLK3-208ENST00000562626 A0A0G2JN53 185 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 TMEM120BA0PK00 339 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 ZNF860A6NHJ4 632 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 MEN1O00255 615 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 DSCR3O14972 297 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 PRPF4O43172 522 aaKnown RBP eCLIP9.31□□□□□ -0.92
CLK3-208ENST00000562626 NDUFS4O43181 175 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 MAP3K7O43318 606 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 ETHE1O95571 254 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 SERPIND1P05546 499 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 BPGMP07738 259 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 LIPCP11150 499 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 LIFP15018 202 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms