RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-208	ENST00000558155	HEMGN	Q9BXL5	484 aa		4.87	□□□□□ -1.63
SPG11-208	ENST00000558155	C10orf88	Q9H8K7	445 aa		4.87	□□□□□ -1.63
SPG11-208	ENST00000558155	ZFAND3	Q9H8U3	227 aa		4.87	□□□□□ -1.63
SPG11-208	ENST00000558155	TRIM45	Q9H8W5	580 aa	Predicted RBP	4.87	□□□□□ -1.63
SPG11-208	ENST00000558155	LRRC40	Q9H9A6	602 aa		4.87	□□□□□ -1.63
SPG11-208	ENST00000558155	NEUROD4	Q9HD90	331 aa		4.87	□□□□□ -1.63
SPG11-208	ENST00000558155	LMBRD1	Q9NUN5	540 aa		4.87	□□□□□ -1.63
SPG11-208	ENST00000558155	ZNHIT6	Q9NWK9	470 aa	Known RBP	4.87	□□□□□ -1.63
SPG11-208	ENST00000558155	SPATA7	Q9P0W8	599 aa		4.87	□□□□□ -1.63
SPG11-208	ENST00000558155	L3MBTL1	Q9Y468	752 aa		4.87	□□□□□ -1.63
SPG11-208	ENST00000558155	HYOU1	Q9Y4L1	999 aa		4.87	□□□□□ -1.63
SPG11-208	ENST00000558155	DUSP10	Q9Y6W6	482 aa		4.87	□□□□□ -1.63
SPG11-208	ENST00000558155	NF1	P21359	2839 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155		A0A1W2PPV9	198 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	MROH6	A6NGR9	719 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	OR51F1	A6NGY5	319 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	IQCF5	A8MTL0	148 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	FAM47E-STBD1	D6RA91	191 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	NPIPA2	E9PIF3	369 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	NPIPA3	F8WFD2	350 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	SYT5	O00445	386 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	FCHO1	O14526	889 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	PRMT5	O14744	637 aa	Predicted RBP	4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	ARHGEF9	O43307	516 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	PEX1	O43933	1283 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	NRP2	O60462	931 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	MAN1A2	O60476	641 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	NSA2	O95478	260 aa	Known RBP	4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	GOT2	P00505	430 aa	Known RBP	4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	HEXA	P06865	529 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	RBP3	P10745	1247 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	EZR	P15311	586 aa	Known RBP	4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	ACVR2A	P27037	513 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	TPP2	P29144	1249 aa	Predicted RBP	4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	TRHR	P34981	398 aa	Predicted RBP	4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	DEK	P35659	375 aa	Known RBP	4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	BCL6	P41182	706 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	CETN2	P41208	172 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	XCR1	P46094	333 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	BDKRB1	P46663	353 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	EFNA3	P52797	238 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	ITGA8	P53708	1063 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	DLX5	P56178	289 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	UBASH3A	P57075	661 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	OR4D2	P58180	307 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	MLF1	P58340	268 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	SLC26A5	P58743	744 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	EIF3E	P60228	445 aa	Known RBP	4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	YBX1	P67809	324 aa	Known RBP	4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	TPM4	P67936	248 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	ABAT	P80404	500 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	MPP1	Q00013	466 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	TSTA3	Q13630	321 aa	Predicted RBP	4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	USP10	Q14694	798 aa	Known RBP	4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	ARHGAP19	Q14CB8	494 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	TCEAL1	Q15170	157 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	ASTE1	Q2TB18	679 aa	Predicted RBP	4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	SLC25A35	Q3KQZ1	300 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	CMPK2	Q5EBM0	449 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	AARS2	Q5JTZ9	985 aa	Known RBP	4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	MEI1	Q5TIA1	1274 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	ZNF468	Q5VIY5	522 aa	Predicted RBP	4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	SHE	Q5VZ18	495 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	FBXW10	Q5XX13	1052 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	KCTD11	Q693B1	232 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	PTRHD1	Q6GMV3	140 aa	Known RBP	4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	ZNF585A	Q6P3V2	769 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	AFTPH	Q6ULP2	937 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	RGS9BP	Q6ZS82	235 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	BBS12	Q6ZW61	710 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	CHSY3	Q70JA7	882 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	CXXC5	Q7LFL8	322 aa	Known RBP	4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	OTOA	Q7RTW8	1153 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	LINC00523	Q86TU6	105 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	KATNAL2	Q8IYT4	538 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	KRT222	Q8N1A0	295 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	ARHGEF39	Q8N4T4	335 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	TMEM156	Q8N614	296 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	ZNF511	Q8NB15	262 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	WFDC11	Q8NEX6	87 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	OR52N2	Q8NGI0	321 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	OR9A1P	Q8NGU1	263 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	OR9A4	Q8NGU2	314 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	OR6P1	Q8NGX9	317 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	OR4L1	Q8NH43	312 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	ACTL9	Q8TC94	416 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	ELP5	Q8TE02	316 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	CREB3L4	Q8TEY5	395 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	FAM222B	Q8WU58	562 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	ARSG	Q96EG1	525 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	PWWP2A	Q96N64	755 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	SMR3A	Q99954	134 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	TTYH2	Q9BSA4	534 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	DEFB126	Q9BYW3	111 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	DEFB127	Q9H1M4	99 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	ZNF395	Q9H8N7	513 aa	Predicted RBP	4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	ANKH	Q9HCJ1	492 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	PCYOX1	Q9UHG3	505 aa		4.86	□□□□□ -1.63
SPG11-208	ENST00000558155	RIMKLB	Q9ULI2	386 aa		4.86	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms